Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_4142 and Shewana3_4143 are separated by 83 nucleotides Shewana3_4143 and Shewana3_4144 are separated by 43 nucleotides Shewana3_4144 and Shewana3_4145 are separated by 36 nucleotides Shewana3_4145 and Shewana3_4146 are separated by 175 nucleotides Shewana3_4146 and Shewana3_4147 are separated by 51 nucleotides
Shewana3_4142: Shewana3_4142 - IS4 family transposase (RefSeq), at 1,491 to 2,471
_4142
Shewana3_4143: Shewana3_4143 - hypothetical protein (RefSeq), at 2,555 to 2,836
_4143
Shewana3_4144: Shewana3_4144 - plastocyanin domain-containing protein (RefSeq), at 2,880 to 3,239
_4144
Shewana3_4145: Shewana3_4145 - copper-translocating P-type ATPase (RefSeq), at 3,276 to 5,612
_4145
Shewana3_4146: Shewana3_4146 - GntR family transcriptional regulator (RefSeq), at 5,788 to 6,504
_4146
Shewana3_4147: Shewana3_4147 - outer membrane porin (RefSeq), at 6,556 to 7,779
_4147
Position (kb) 3
4
5
6 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 2.276 kb on - strand, within Shewana3_4142 at 2.337 kb on - strand, within Shewana3_4142 at 2.352 kb on - strand, within Shewana3_4142 at 2.545 kb on - strand at 2.898 kb on + strand at 2.903 kb on + strand at 2.906 kb on - strand at 3.106 kb on + strand, within Shewana3_4144 at 3.209 kb on + strand at 3.231 kb on - strand at 3.321 kb on - strand at 3.486 kb on - strand at 3.501 kb on + strand at 3.828 kb on - strand, within Shewana3_4145 at 4.013 kb on + strand, within Shewana3_4145 at 4.260 kb on + strand, within Shewana3_4145 at 4.262 kb on + strand, within Shewana3_4145 at 4.566 kb on - strand, within Shewana3_4145 at 4.590 kb on - strand, within Shewana3_4145 at 4.690 kb on + strand, within Shewana3_4145 at 4.706 kb on - strand, within Shewana3_4145 at 4.819 kb on + strand, within Shewana3_4145 at 4.853 kb on + strand, within Shewana3_4145 at 4.853 kb on + strand, within Shewana3_4145 at 4.861 kb on - strand, within Shewana3_4145 at 4.892 kb on + strand, within Shewana3_4145 at 4.900 kb on - strand, within Shewana3_4145 at 4.900 kb on - strand, within Shewana3_4145 at 4.972 kb on - strand, within Shewana3_4145 at 5.112 kb on + strand, within Shewana3_4145 at 5.152 kb on + strand, within Shewana3_4145 at 5.388 kb on - strand at 5.430 kb on + strand at 5.441 kb on - strand at 5.521 kb on + strand at 5.548 kb on - strand at 5.551 kb on - strand at 5.551 kb on - strand at 5.558 kb on - strand at 5.608 kb on + strand at 5.609 kb on + strand at 5.610 kb on + strand at 5.617 kb on - strand at 5.617 kb on - strand at 5.630 kb on - strand at 5.630 kb on - strand at 5.639 kb on - strand at 5.673 kb on - strand at 5.676 kb on + strand at 5.690 kb on + strand at 5.705 kb on - strand at 5.723 kb on + strand at 5.723 kb on + strand at 5.731 kb on - strand at 5.735 kb on - strand at 5.751 kb on - strand at 5.751 kb on - strand at 5.751 kb on - strand at 5.751 kb on - strand at 5.751 kb on - strand at 5.751 kb on - strand at 5.751 kb on - strand at 5.783 kb on + strand at 5.809 kb on - strand at 5.809 kb on - strand at 5.815 kb on + strand at 5.842 kb on + strand at 5.850 kb on - strand at 5.850 kb on - strand at 5.850 kb on - strand at 5.851 kb on + strand at 5.851 kb on + strand at 5.851 kb on + strand at 5.852 kb on + strand at 5.856 kb on + strand at 5.856 kb on + strand at 5.864 kb on - strand, within Shewana3_4146 at 5.874 kb on + strand, within Shewana3_4146 at 5.874 kb on + strand, within Shewana3_4146 at 5.874 kb on + strand, within Shewana3_4146 at 5.874 kb on + strand, within Shewana3_4146 at 5.883 kb on - strand, within Shewana3_4146 at 5.883 kb on - strand, within Shewana3_4146 at 5.888 kb on + strand, within Shewana3_4146 at 5.888 kb on + strand, within Shewana3_4146 at 5.888 kb on + strand, within Shewana3_4146 at 5.888 kb on + strand, within Shewana3_4146 at 5.896 kb on - strand, within Shewana3_4146 at 5.896 kb on - strand, within Shewana3_4146 at 5.898 kb on + strand, within Shewana3_4146 at 5.907 kb on - strand, within Shewana3_4146 at 5.907 kb on - strand, within Shewana3_4146 at 5.907 kb on - strand, within Shewana3_4146 at 5.907 kb on - strand, within Shewana3_4146 at 5.909 kb on + strand, within Shewana3_4146 at 5.911 kb on - strand, within Shewana3_4146 at 5.917 kb on - strand, within Shewana3_4146 at 5.917 kb on - strand, within Shewana3_4146 at 5.917 kb on - strand, within Shewana3_4146 at 5.917 kb on - strand, within Shewana3_4146 at 5.917 kb on - strand, within Shewana3_4146 at 6.003 kb on + strand, within Shewana3_4146 at 6.014 kb on + strand, within Shewana3_4146 at 6.021 kb on - strand, within Shewana3_4146 at 6.022 kb on - strand, within Shewana3_4146 at 6.022 kb on - strand, within Shewana3_4146 at 6.022 kb on - strand, within Shewana3_4146 at 6.022 kb on - strand, within Shewana3_4146 at 6.029 kb on + strand, within Shewana3_4146 at 6.029 kb on + strand, within Shewana3_4146 at 6.037 kb on - strand, within Shewana3_4146 at 6.072 kb on + strand, within Shewana3_4146 at 6.080 kb on + strand, within Shewana3_4146 at 6.085 kb on + strand, within Shewana3_4146 at 6.088 kb on - strand, within Shewana3_4146 at 6.093 kb on - strand, within Shewana3_4146 at 6.093 kb on - strand, within Shewana3_4146 at 6.095 kb on + strand, within Shewana3_4146 at 6.095 kb on + strand, within Shewana3_4146 at 6.095 kb on + strand, within Shewana3_4146 at 6.095 kb on + strand, within Shewana3_4146 at 6.095 kb on + strand, within Shewana3_4146 at 6.095 kb on + strand, within Shewana3_4146 at 6.095 kb on + strand, within Shewana3_4146 at 6.102 kb on - strand, within Shewana3_4146 at 6.102 kb on - strand, within Shewana3_4146 at 6.102 kb on - strand, within Shewana3_4146 at 6.102 kb on - strand, within Shewana3_4146 at 6.102 kb on - strand, within Shewana3_4146 at 6.102 kb on - strand, within Shewana3_4146 at 6.102 kb on - strand, within Shewana3_4146 at 6.102 kb on - strand, within Shewana3_4146 at 6.102 kb on - strand, within Shewana3_4146 at 6.102 kb on - strand, within Shewana3_4146 at 6.102 kb on - strand, within Shewana3_4146 at 6.102 kb on - strand, within Shewana3_4146 at 6.102 kb on - strand, within Shewana3_4146 at 6.102 kb on - strand, within Shewana3_4146 at 6.103 kb on - strand, within Shewana3_4146 at 6.103 kb on - strand, within Shewana3_4146 at 6.117 kb on - strand, within Shewana3_4146 at 6.126 kb on + strand, within Shewana3_4146 at 6.127 kb on - strand, within Shewana3_4146 at 6.129 kb on + strand, within Shewana3_4146 at 6.138 kb on - strand, within Shewana3_4146 at 6.164 kb on + strand, within Shewana3_4146 at 6.164 kb on + strand, within Shewana3_4146 at 6.164 kb on + strand, within Shewana3_4146 at 6.172 kb on - strand, within Shewana3_4146 at 6.172 kb on - strand, within Shewana3_4146 at 6.172 kb on - strand, within Shewana3_4146 at 6.174 kb on + strand, within Shewana3_4146 at 6.174 kb on + strand, within Shewana3_4146 at 6.174 kb on + strand, within Shewana3_4146 at 6.177 kb on - strand, within Shewana3_4146 at 6.182 kb on - strand, within Shewana3_4146 at 6.182 kb on - strand, within Shewana3_4146 at 6.188 kb on + strand, within Shewana3_4146 at 6.188 kb on + strand, within Shewana3_4146 at 6.188 kb on + strand, within Shewana3_4146 at 6.188 kb on + strand, within Shewana3_4146 at 6.188 kb on + strand, within Shewana3_4146 at 6.188 kb on + strand, within Shewana3_4146 at 6.188 kb on + strand, within Shewana3_4146 at 6.188 kb on + strand, within Shewana3_4146 at 6.196 kb on - strand, within Shewana3_4146 at 6.196 kb on - strand, within Shewana3_4146 at 6.196 kb on - strand, within Shewana3_4146 at 6.196 kb on - strand, within Shewana3_4146 at 6.196 kb on - strand, within Shewana3_4146 at 6.196 kb on - strand, within Shewana3_4146 at 6.196 kb on - strand, within Shewana3_4146 at 6.196 kb on - strand, within Shewana3_4146 at 6.196 kb on - strand, within Shewana3_4146 at 6.196 kb on - strand, within Shewana3_4146 at 6.196 kb on - strand, within Shewana3_4146 at 6.196 kb on - strand, within Shewana3_4146 at 6.196 kb on - strand, within Shewana3_4146 at 6.206 kb on - strand, within Shewana3_4146 at 6.206 kb on - strand, within Shewana3_4146 at 6.275 kb on - strand, within Shewana3_4146 at 6.276 kb on + strand, within Shewana3_4146 at 6.294 kb on + strand, within Shewana3_4146 at 6.294 kb on + strand, within Shewana3_4146 at 6.297 kb on - strand, within Shewana3_4146 at 6.299 kb on + strand, within Shewana3_4146 at 6.299 kb on + strand, within Shewana3_4146 at 6.299 kb on + strand, within Shewana3_4146 at 6.307 kb on - strand, within Shewana3_4146 at 6.309 kb on + strand, within Shewana3_4146 at 6.309 kb on + strand, within Shewana3_4146 at 6.309 kb on + strand, within Shewana3_4146 at 6.309 kb on + strand, within Shewana3_4146 at 6.309 kb on + strand, within Shewana3_4146 at 6.309 kb on + strand, within Shewana3_4146 at 6.309 kb on + strand, within Shewana3_4146 at 6.312 kb on - strand, within Shewana3_4146 at 6.317 kb on - strand, within Shewana3_4146 at 6.317 kb on - strand, within Shewana3_4146 at 6.317 kb on - strand, within Shewana3_4146 at 6.345 kb on + strand, within Shewana3_4146 at 6.346 kb on + strand, within Shewana3_4146 at 6.354 kb on + strand, within Shewana3_4146 at 6.356 kb on + strand, within Shewana3_4146 at 6.359 kb on + strand, within Shewana3_4146 at 6.362 kb on - strand, within Shewana3_4146 at 6.364 kb on - strand, within Shewana3_4146 at 6.364 kb on - strand, within Shewana3_4146 at 6.364 kb on - strand, within Shewana3_4146 at 6.364 kb on - strand, within Shewana3_4146 at 6.413 kb on + strand, within Shewana3_4146 at 6.413 kb on + strand, within Shewana3_4146 at 6.421 kb on - strand, within Shewana3_4146 at 6.421 kb on - strand, within Shewana3_4146 at 6.467 kb on + strand at 6.467 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 2,276 - Shewana3_4142 0.80 -0.9 2,337 - Shewana3_4142 0.86 -0.3 2,352 - Shewana3_4142 0.88 -0.4 2,545 - -0.5 2,898 + -0.6 2,903 + +0.2 2,906 - +0.5 3,106 + Shewana3_4144 0.63 -2.3 3,209 + -1.3 3,231 - -2.7 3,321 - +0.6 3,486 - -0.6 3,501 + -1.3 3,828 - Shewana3_4145 0.24 +0.3 4,013 + Shewana3_4145 0.32 -1.0 4,260 + Shewana3_4145 0.42 -1.1 4,262 + Shewana3_4145 0.42 -1.3 4,566 - Shewana3_4145 0.55 -0.2 4,590 - Shewana3_4145 0.56 -0.8 4,690 + Shewana3_4145 0.61 -0.3 4,706 - Shewana3_4145 0.61 -0.2 4,819 + Shewana3_4145 0.66 -1.6 4,853 + Shewana3_4145 0.67 -0.8 4,853 + Shewana3_4145 0.67 -0.4 4,861 - Shewana3_4145 0.68 -0.4 4,892 + Shewana3_4145 0.69 -3.2 4,900 - Shewana3_4145 0.69 +0.2 4,900 - Shewana3_4145 0.69 +0.3 4,972 - Shewana3_4145 0.73 +0.6 5,112 + Shewana3_4145 0.79 -0.1 5,152 + Shewana3_4145 0.80 -1.3 5,388 - -0.5 5,430 + -0.6 5,441 - +0.2 5,521 + -0.6 5,548 - +0.4 5,551 - +0.2 5,551 - +0.3 5,558 - +0.4 5,608 + -1.0 5,609 + +0.6 5,610 + -1.1 5,617 - +0.4 5,617 - +0.0 5,630 - +0.2 5,630 - +0.7 5,639 - +0.0 5,673 - +1.4 5,676 + -0.4 5,690 + -0.7 5,705 - -0.0 5,723 + +2.2 5,723 + -0.4 5,731 - +0.1 5,735 - -0.0 5,751 - -0.4 5,751 - +0.8 5,751 - -0.4 5,751 - +0.0 5,751 - +0.4 5,751 - -0.1 5,751 - +0.2 5,783 + +0.6 5,809 - -0.5 5,809 - +0.4 5,815 + -1.3 5,842 + +0.8 5,850 - -0.0 5,850 - -0.1 5,850 - +0.5 5,851 + -1.5 5,851 + +0.6 5,851 + -1.6 5,852 + +1.2 5,856 + +0.6 5,856 + +2.2 5,864 - Shewana3_4146 0.11 +0.3 5,874 + Shewana3_4146 0.12 -0.6 5,874 + Shewana3_4146 0.12 -0.4 5,874 + Shewana3_4146 0.12 -1.3 5,874 + Shewana3_4146 0.12 -1.9 5,883 - Shewana3_4146 0.13 +0.1 5,883 - Shewana3_4146 0.13 -0.1 5,888 + Shewana3_4146 0.14 -0.3 5,888 + Shewana3_4146 0.14 -2.0 5,888 + Shewana3_4146 0.14 +0.7 5,888 + Shewana3_4146 0.14 +2.2 5,896 - Shewana3_4146 0.15 -0.0 5,896 - Shewana3_4146 0.15 +0.2 5,898 + Shewana3_4146 0.15 -0.0 5,907 - Shewana3_4146 0.17 -0.3 5,907 - Shewana3_4146 0.17 +0.5 5,907 - Shewana3_4146 0.17 +1.2 5,907 - Shewana3_4146 0.17 +0.2 5,909 + Shewana3_4146 0.17 -2.8 5,911 - Shewana3_4146 0.17 -0.1 5,917 - Shewana3_4146 0.18 -0.6 5,917 - Shewana3_4146 0.18 -1.1 5,917 - Shewana3_4146 0.18 -0.1 5,917 - Shewana3_4146 0.18 +1.3 5,917 - Shewana3_4146 0.18 -0.3 6,003 + Shewana3_4146 0.30 -0.1 6,014 + Shewana3_4146 0.32 -1.0 6,021 - Shewana3_4146 0.32 -0.5 6,022 - Shewana3_4146 0.33 +0.5 6,022 - Shewana3_4146 0.33 +0.1 6,022 - Shewana3_4146 0.33 -0.1 6,022 - Shewana3_4146 0.33 +0.7 6,029 + Shewana3_4146 0.34 -2.1 6,029 + Shewana3_4146 0.34 -1.1 6,037 - Shewana3_4146 0.35 -0.5 6,072 + Shewana3_4146 0.40 -1.2 6,080 + Shewana3_4146 0.41 -0.1 6,085 + Shewana3_4146 0.41 -2.7 6,088 - Shewana3_4146 0.42 +0.5 6,093 - Shewana3_4146 0.43 +0.5 6,093 - Shewana3_4146 0.43 +0.4 6,095 + Shewana3_4146 0.43 +1.2 6,095 + Shewana3_4146 0.43 +0.6 6,095 + Shewana3_4146 0.43 -2.1 6,095 + Shewana3_4146 0.43 -0.4 6,095 + Shewana3_4146 0.43 -1.5 6,095 + Shewana3_4146 0.43 +2.2 6,095 + Shewana3_4146 0.43 +2.2 6,102 - Shewana3_4146 0.44 +0.4 6,102 - Shewana3_4146 0.44 +0.6 6,102 - Shewana3_4146 0.44 +0.0 6,102 - Shewana3_4146 0.44 +0.1 6,102 - Shewana3_4146 0.44 -0.4 6,102 - Shewana3_4146 0.44 +0.3 6,102 - Shewana3_4146 0.44 -0.2 6,102 - Shewana3_4146 0.44 -0.0 6,102 - Shewana3_4146 0.44 +0.3 6,102 - Shewana3_4146 0.44 +0.2 6,102 - Shewana3_4146 0.44 -0.6 6,102 - Shewana3_4146 0.44 +0.1 6,102 - Shewana3_4146 0.44 +0.1 6,102 - Shewana3_4146 0.44 +0.3 6,103 - Shewana3_4146 0.44 +0.1 6,103 - Shewana3_4146 0.44 -0.4 6,117 - Shewana3_4146 0.46 -0.3 6,126 + Shewana3_4146 0.47 -0.2 6,127 - Shewana3_4146 0.47 +0.1 6,129 + Shewana3_4146 0.48 +0.3 6,138 - Shewana3_4146 0.49 +0.1 6,164 + Shewana3_4146 0.52 +0.6 6,164 + Shewana3_4146 0.52 +0.1 6,164 + Shewana3_4146 0.52 -0.7 6,172 - Shewana3_4146 0.54 -1.1 6,172 - Shewana3_4146 0.54 +0.9 6,172 - Shewana3_4146 0.54 +0.4 6,174 + Shewana3_4146 0.54 -2.1 6,174 + Shewana3_4146 0.54 -0.8 6,174 + Shewana3_4146 0.54 +0.6 6,177 - Shewana3_4146 0.54 -0.2 6,182 - Shewana3_4146 0.55 +0.1 6,182 - Shewana3_4146 0.55 +0.3 6,188 + Shewana3_4146 0.56 -1.1 6,188 + Shewana3_4146 0.56 -0.6 6,188 + Shewana3_4146 0.56 -0.1 6,188 + Shewana3_4146 0.56 +0.2 6,188 + Shewana3_4146 0.56 +0.4 6,188 + Shewana3_4146 0.56 +0.7 6,188 + Shewana3_4146 0.56 +2.2 6,188 + Shewana3_4146 0.56 -0.1 6,196 - Shewana3_4146 0.57 +0.5 6,196 - Shewana3_4146 0.57 +0.0 6,196 - Shewana3_4146 0.57 +0.3 6,196 - Shewana3_4146 0.57 -1.1 6,196 - Shewana3_4146 0.57 -0.4 6,196 - Shewana3_4146 0.57 -0.3 6,196 - Shewana3_4146 0.57 -0.2 6,196 - Shewana3_4146 0.57 +0.4 6,196 - Shewana3_4146 0.57 -0.2 6,196 - Shewana3_4146 0.57 +1.1 6,196 - Shewana3_4146 0.57 -0.1 6,196 - Shewana3_4146 0.57 -0.2 6,196 - Shewana3_4146 0.57 +0.0 6,206 - Shewana3_4146 0.58 +0.3 6,206 - Shewana3_4146 0.58 +0.4 6,275 - Shewana3_4146 0.68 -0.3 6,276 + Shewana3_4146 0.68 +0.5 6,294 + Shewana3_4146 0.71 -0.4 6,294 + Shewana3_4146 0.71 -1.1 6,297 - Shewana3_4146 0.71 +0.0 6,299 + Shewana3_4146 0.71 +2.2 6,299 + Shewana3_4146 0.71 -0.4 6,299 + Shewana3_4146 0.71 -2.8 6,307 - Shewana3_4146 0.72 +1.1 6,309 + Shewana3_4146 0.73 -0.1 6,309 + Shewana3_4146 0.73 -0.8 6,309 + Shewana3_4146 0.73 -1.0 6,309 + Shewana3_4146 0.73 -1.6 6,309 + Shewana3_4146 0.73 -0.4 6,309 + Shewana3_4146 0.73 -0.4 6,309 + Shewana3_4146 0.73 +0.6 6,312 - Shewana3_4146 0.73 +0.2 6,317 - Shewana3_4146 0.74 -1.1 6,317 - Shewana3_4146 0.74 +0.4 6,317 - Shewana3_4146 0.74 -1.2 6,345 + Shewana3_4146 0.78 -2.4 6,346 + Shewana3_4146 0.78 -1.8 6,354 + Shewana3_4146 0.79 +0.3 6,356 + Shewana3_4146 0.79 +0.1 6,359 + Shewana3_4146 0.80 +0.6 6,362 - Shewana3_4146 0.80 +0.0 6,364 - Shewana3_4146 0.80 -0.2 6,364 - Shewana3_4146 0.80 -0.1 6,364 - Shewana3_4146 0.80 -0.7 6,364 - Shewana3_4146 0.80 +0.6 6,413 + Shewana3_4146 0.87 -1.1 6,413 + Shewana3_4146 0.87 -1.4 6,421 - Shewana3_4146 0.88 +0.1 6,421 - Shewana3_4146 0.88 -0.5 6,467 + +1.0 6,467 - -1.9
Or see this region's nucleotide sequence