Experiment: Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 1x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_06384 and H281DRAFT_06385 overlap by 4 nucleotides H281DRAFT_06385 and H281DRAFT_06386 are separated by 82 nucleotides H281DRAFT_06386 and H281DRAFT_06387 are separated by 163 nucleotides
H281DRAFT_06384: H281DRAFT_06384 - hypothetical protein, at 56,683 to 57,741
_06384
H281DRAFT_06385: H281DRAFT_06385 - hypothetical protein, at 57,738 to 57,872
_06385
H281DRAFT_06386: H281DRAFT_06386 - Sugar phosphate permease, at 57,955 to 59,259
_06386
H281DRAFT_06387: H281DRAFT_06387 - GntR family transcriptional regulator, at 59,423 to 60,166
_06387
Position (kb) 57
58
59
60 Strain fitness (log2 ratio) -2
-1
0
1
2 at 57.247 kb on + strand, within H281DRAFT_06384 at 57.394 kb on + strand, within H281DRAFT_06384 at 57.394 kb on + strand, within H281DRAFT_06384 at 57.394 kb on + strand, within H281DRAFT_06384 at 57.793 kb on - strand, within H281DRAFT_06385 at 57.962 kb on - strand at 58.050 kb on + strand at 58.050 kb on + strand at 58.051 kb on - strand at 58.077 kb on + strand at 58.078 kb on - strand at 58.078 kb on - strand at 58.217 kb on + strand, within H281DRAFT_06386 at 58.218 kb on - strand, within H281DRAFT_06386 at 58.475 kb on + strand, within H281DRAFT_06386 at 58.487 kb on + strand at 58.511 kb on + strand, within H281DRAFT_06386 at 58.511 kb on + strand, within H281DRAFT_06386 at 58.512 kb on - strand, within H281DRAFT_06386 at 58.512 kb on - strand, within H281DRAFT_06386 at 58.844 kb on + strand, within H281DRAFT_06386 at 58.844 kb on + strand, within H281DRAFT_06386 at 58.845 kb on - strand, within H281DRAFT_06386 at 58.872 kb on - strand, within H281DRAFT_06386 at 58.874 kb on + strand, within H281DRAFT_06386 at 58.875 kb on - strand, within H281DRAFT_06386 at 58.931 kb on + strand, within H281DRAFT_06386 at 59.096 kb on + strand, within H281DRAFT_06386 at 59.246 kb on - strand at 59.352 kb on - strand at 59.637 kb on + strand, within H281DRAFT_06387 at 59.791 kb on + strand, within H281DRAFT_06387 at 60.180 kb on + strand at 60.180 kb on + strand at 60.192 kb on + strand at 60.192 kb on + strand at 60.196 kb on + strand at 60.196 kb on + strand at 60.197 kb on - strand at 60.202 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 1x remove 57,247 + H281DRAFT_06384 0.53 +0.8 57,394 + H281DRAFT_06384 0.67 -2.4 57,394 + H281DRAFT_06384 0.67 +0.1 57,394 + H281DRAFT_06384 0.67 -0.1 57,793 - H281DRAFT_06385 0.41 -0.1 57,962 - +0.4 58,050 + -0.5 58,050 + -0.4 58,051 - +0.5 58,077 + -0.5 58,078 - -0.3 58,078 - -0.1 58,217 + H281DRAFT_06386 0.20 -0.5 58,218 - H281DRAFT_06386 0.20 -0.8 58,475 + H281DRAFT_06386 0.40 +0.3 58,487 + +1.6 58,511 + H281DRAFT_06386 0.43 +0.1 58,511 + H281DRAFT_06386 0.43 +0.5 58,512 - H281DRAFT_06386 0.43 -0.2 58,512 - H281DRAFT_06386 0.43 -1.1 58,844 + H281DRAFT_06386 0.68 +1.9 58,844 + H281DRAFT_06386 0.68 -0.4 58,845 - H281DRAFT_06386 0.68 +2.4 58,872 - H281DRAFT_06386 0.70 +0.1 58,874 + H281DRAFT_06386 0.70 -0.6 58,875 - H281DRAFT_06386 0.70 -0.5 58,931 + H281DRAFT_06386 0.75 -1.0 59,096 + H281DRAFT_06386 0.87 -0.3 59,246 - +0.2 59,352 - -0.4 59,637 + H281DRAFT_06387 0.29 -0.1 59,791 + H281DRAFT_06387 0.49 +0.4 60,180 + -0.2 60,180 + +1.0 60,192 + -0.3 60,192 + -0.0 60,196 + -0.3 60,196 + +0.4 60,197 - -0.0 60,202 - +0.4
Or see this region's nucleotide sequence