Experiment: Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 1x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_06353 and H281DRAFT_06354 are separated by 127 nucleotides H281DRAFT_06354 and H281DRAFT_06355 are separated by 36 nucleotides
H281DRAFT_06353: H281DRAFT_06353 - transcriptional regulator, LysR family, at 26,962 to 27,861
_06353
H281DRAFT_06354: H281DRAFT_06354 - Sugar phosphate permease, at 27,989 to 29,311
_06354
H281DRAFT_06355: H281DRAFT_06355 - 4-oxalomesaconate hydratase, at 29,348 to 30,388
_06355
Position (kb) 27
28
29
30 Strain fitness (log2 ratio) -1
0
1 at 27.148 kb on + strand, within H281DRAFT_06353 at 27.149 kb on - strand, within H281DRAFT_06353 at 27.174 kb on - strand at 27.268 kb on + strand, within H281DRAFT_06353 at 27.269 kb on - strand, within H281DRAFT_06353 at 27.631 kb on + strand, within H281DRAFT_06353 at 27.728 kb on - strand, within H281DRAFT_06353 at 27.858 kb on - strand at 27.873 kb on + strand at 27.934 kb on + strand at 27.988 kb on + strand at 27.988 kb on + strand at 28.029 kb on - strand at 28.178 kb on + strand, within H281DRAFT_06354 at 28.311 kb on - strand, within H281DRAFT_06354 at 29.372 kb on + strand at 29.713 kb on + strand, within H281DRAFT_06355 at 30.089 kb on + strand, within H281DRAFT_06355 at 30.125 kb on + strand, within H281DRAFT_06355 at 30.258 kb on - strand, within H281DRAFT_06355 at 30.303 kb on + strand at 30.305 kb on + strand at 30.305 kb on + strand at 30.306 kb on - strand at 30.306 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 1x remove 27,148 + H281DRAFT_06353 0.21 +0.7 27,149 - H281DRAFT_06353 0.21 +0.8 27,174 - +1.0 27,268 + H281DRAFT_06353 0.34 -0.2 27,269 - H281DRAFT_06353 0.34 -0.6 27,631 + H281DRAFT_06353 0.74 -0.1 27,728 - H281DRAFT_06353 0.85 -0.2 27,858 - -0.0 27,873 + +0.7 27,934 + +0.1 27,988 + +0.2 27,988 + +0.7 28,029 - +0.9 28,178 + H281DRAFT_06354 0.14 -0.1 28,311 - H281DRAFT_06354 0.24 +1.3 29,372 + -0.0 29,713 + H281DRAFT_06355 0.35 +1.0 30,089 + H281DRAFT_06355 0.71 -0.3 30,125 + H281DRAFT_06355 0.75 +1.0 30,258 - H281DRAFT_06355 0.87 +0.0 30,303 + -0.5 30,305 + +0.5 30,305 + +0.2 30,306 - -0.1 30,306 - +0.3
Or see this region's nucleotide sequence