Experiment: Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 1x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_06319 and H281DRAFT_06320 are separated by 51 nucleotides H281DRAFT_06320 and H281DRAFT_06321 are separated by 147 nucleotides H281DRAFT_06321 and H281DRAFT_06322 are separated by 91 nucleotides H281DRAFT_06322 and H281DRAFT_06323 are separated by 36 nucleotides
H281DRAFT_06319: H281DRAFT_06319 - biopolymer transport protein ExbB, at 103,114 to 103,824
_06319
H281DRAFT_06320: H281DRAFT_06320 - biopolymer transport protein ExbD, at 103,876 to 104,307
_06320
H281DRAFT_06321: H281DRAFT_06321 - leucyl-tRNA synthetase, at 104,455 to 107,046
_06321
H281DRAFT_06322: H281DRAFT_06322 - LPS-assembly lipoprotein, at 107,138 to 107,692
_06322
H281DRAFT_06323: H281DRAFT_06323 - DNA polymerase III, delta subunit, at 107,729 to 108,853
_06323
Position (kb) 104
105
106
107
108 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 103.561 kb on + strand, within H281DRAFT_06319 at 103.561 kb on + strand, within H281DRAFT_06319 at 103.759 kb on + strand at 103.759 kb on + strand at 103.759 kb on + strand at 103.759 kb on + strand at 103.760 kb on - strand at 103.760 kb on - strand at 103.760 kb on - strand at 103.760 kb on - strand at 103.832 kb on - strand at 103.848 kb on - strand at 103.865 kb on + strand at 103.865 kb on + strand at 103.866 kb on - strand at 103.866 kb on - strand at 103.866 kb on - strand at 103.994 kb on + strand, within H281DRAFT_06320 at 103.995 kb on - strand, within H281DRAFT_06320 at 104.098 kb on + strand, within H281DRAFT_06320 at 104.209 kb on + strand, within H281DRAFT_06320 at 104.352 kb on + strand at 104.352 kb on + strand at 107.225 kb on + strand, within H281DRAFT_06322 at 107.438 kb on + strand, within H281DRAFT_06322 at 107.510 kb on + strand, within H281DRAFT_06322 at 107.512 kb on + strand, within H281DRAFT_06322 at 107.522 kb on + strand, within H281DRAFT_06322 at 107.720 kb on + strand at 107.720 kb on + strand at 107.720 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 1x remove 103,561 + H281DRAFT_06319 0.63 -1.0 103,561 + H281DRAFT_06319 0.63 +0.4 103,759 + -0.3 103,759 + +1.0 103,759 + -0.7 103,759 + -0.1 103,760 - +0.8 103,760 - +1.7 103,760 - +1.2 103,760 - -0.1 103,832 - -0.3 103,848 - -0.0 103,865 + -2.0 103,865 + +0.1 103,866 - +0.3 103,866 - -0.3 103,866 - -0.5 103,994 + H281DRAFT_06320 0.27 -0.1 103,995 - H281DRAFT_06320 0.28 +0.7 104,098 + H281DRAFT_06320 0.51 +0.6 104,209 + H281DRAFT_06320 0.77 +2.2 104,352 + -0.4 104,352 + +1.0 107,225 + H281DRAFT_06322 0.16 -0.4 107,438 + H281DRAFT_06322 0.54 -3.3 107,510 + H281DRAFT_06322 0.67 -3.2 107,512 + H281DRAFT_06322 0.67 -1.6 107,522 + H281DRAFT_06322 0.69 -1.4 107,720 + -0.6 107,720 + +0.2 107,720 + +1.8
Or see this region's nucleotide sequence