Experiment: Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 1x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_06314 and H281DRAFT_06315 are separated by 107 nucleotides H281DRAFT_06315 and H281DRAFT_06316 are separated by 256 nucleotides H281DRAFT_06316 and H281DRAFT_06317 are separated by 158 nucleotides
H281DRAFT_06314: H281DRAFT_06314 - transketolase, at 97,260 to 99,281
_06314
H281DRAFT_06315: H281DRAFT_06315 - glyceraldehyde-3-phosphate dehydrogenase (NAD+), at 99,389 to 100,399
_06315
H281DRAFT_06316: H281DRAFT_06316 - ferric uptake regulator, Fur family, at 100,656 to 101,084
_06316
H281DRAFT_06317: H281DRAFT_06317 - Beta-barrel assembly machine subunit BamE, at 101,243 to 102,067
_06317
Position (kb) 99
100
101 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 99.353 kb on + strand at 99.362 kb on - strand at 99.383 kb on + strand at 99.384 kb on - strand at 99.452 kb on + strand at 99.453 kb on - strand at 99.537 kb on - strand, within H281DRAFT_06315 at 99.794 kb on + strand at 99.969 kb on - strand, within H281DRAFT_06315 at 100.332 kb on - strand at 100.407 kb on + strand at 100.407 kb on + strand at 100.408 kb on - strand at 100.408 kb on - strand at 100.408 kb on - strand at 100.408 kb on - strand at 100.432 kb on + strand at 100.451 kb on + strand at 100.515 kb on + strand at 101.124 kb on + strand at 101.124 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 1x remove 99,353 + -0.0 99,362 - -1.6 99,383 + -1.1 99,384 - -2.3 99,452 + -0.2 99,453 - +1.4 99,537 - H281DRAFT_06315 0.15 -2.0 99,794 + +0.4 99,969 - H281DRAFT_06315 0.57 -4.4 100,332 - -3.1 100,407 + +0.0 100,407 + +0.5 100,408 - +0.9 100,408 - +1.0 100,408 - +0.4 100,408 - +1.2 100,432 + +1.1 100,451 + +0.1 100,515 + +0.8 101,124 + +0.4 101,124 + +0.9
Or see this region's nucleotide sequence