Experiment: Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 1x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_06294 and H281DRAFT_06295 are separated by 35 nucleotides H281DRAFT_06295 and H281DRAFT_06296 overlap by 4 nucleotides H281DRAFT_06296 and H281DRAFT_06297 are separated by 187 nucleotides
H281DRAFT_06294: H281DRAFT_06294 - 2-keto-3-deoxygalactonate kinase (EC 2.7.1.58), at 77,508 to 78,632
_06294
H281DRAFT_06295: H281DRAFT_06295 - 2-keto-3-deoxy-phosphogalactonate aldolase, at 78,668 to 79,348
_06295
H281DRAFT_06296: H281DRAFT_06296 - NAD(P)-dependent dehydrogenase, short-chain alcohol dehydrogenase family, at 79,345 to 80,121
_06296
H281DRAFT_06297: H281DRAFT_06297 - L-arabinose-binding protein, at 80,309 to 81,307
_06297
Position (kb) 78
79
80 Strain fitness (log2 ratio) -2
-1
0
1
2 at 77.697 kb on + strand, within H281DRAFT_06294 at 77.703 kb on + strand, within H281DRAFT_06294 at 77.899 kb on - strand, within H281DRAFT_06294 at 77.978 kb on + strand, within H281DRAFT_06294 at 77.979 kb on - strand, within H281DRAFT_06294 at 77.979 kb on - strand, within H281DRAFT_06294 at 77.979 kb on - strand, within H281DRAFT_06294 at 78.055 kb on + strand, within H281DRAFT_06294 at 78.375 kb on + strand, within H281DRAFT_06294 at 78.376 kb on - strand, within H281DRAFT_06294 at 78.380 kb on - strand, within H281DRAFT_06294 at 78.698 kb on + strand at 78.699 kb on - strand at 78.699 kb on - strand at 78.699 kb on - strand at 79.089 kb on + strand, within H281DRAFT_06295 at 79.256 kb on + strand, within H281DRAFT_06295 at 79.256 kb on + strand, within H281DRAFT_06295 at 79.257 kb on - strand, within H281DRAFT_06295 at 79.257 kb on - strand, within H281DRAFT_06295 at 79.530 kb on + strand, within H281DRAFT_06296 at 79.530 kb on + strand, within H281DRAFT_06296 at 79.853 kb on + strand, within H281DRAFT_06296 at 79.865 kb on - strand, within H281DRAFT_06296 at 80.080 kb on - strand at 80.162 kb on + strand at 80.273 kb on - strand at 80.290 kb on + strand at 80.291 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 1x remove 77,697 + H281DRAFT_06294 0.17 +2.3 77,703 + H281DRAFT_06294 0.17 +0.7 77,899 - H281DRAFT_06294 0.35 -0.2 77,978 + H281DRAFT_06294 0.42 +0.6 77,979 - H281DRAFT_06294 0.42 +1.1 77,979 - H281DRAFT_06294 0.42 +1.0 77,979 - H281DRAFT_06294 0.42 +0.8 78,055 + H281DRAFT_06294 0.49 +1.6 78,375 + H281DRAFT_06294 0.77 +0.7 78,376 - H281DRAFT_06294 0.77 +0.6 78,380 - H281DRAFT_06294 0.78 +0.6 78,698 + -0.3 78,699 - -0.6 78,699 - -0.5 78,699 - -0.1 79,089 + H281DRAFT_06295 0.62 -1.1 79,256 + H281DRAFT_06295 0.86 -2.1 79,256 + H281DRAFT_06295 0.86 -1.0 79,257 - H281DRAFT_06295 0.86 -0.0 79,257 - H281DRAFT_06295 0.86 -2.3 79,530 + H281DRAFT_06296 0.24 +0.7 79,530 + H281DRAFT_06296 0.24 +1.4 79,853 + H281DRAFT_06296 0.65 +1.0 79,865 - H281DRAFT_06296 0.67 +1.4 80,080 - -0.6 80,162 + -0.6 80,273 - +0.1 80,290 + -0.5 80,291 - +1.0
Or see this region's nucleotide sequence