Experiment: Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 1x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_06264 and H281DRAFT_06265 are separated by 87 nucleotides H281DRAFT_06265 and H281DRAFT_06266 are separated by 85 nucleotides
H281DRAFT_06264: H281DRAFT_06264 - glutamate 5-kinase, at 44,838 to 45,956
_06264
H281DRAFT_06265: H281DRAFT_06265 - CNP1-like family protein, at 46,044 to 46,601
_06265
H281DRAFT_06266: H281DRAFT_06266 - putative (di)nucleoside polyphosphate hydrolase, at 46,687 to 47,430
_06266
Position (kb) 46
47 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 45.109 kb on - strand, within H281DRAFT_06264 at 45.109 kb on - strand, within H281DRAFT_06264 at 45.189 kb on + strand, within H281DRAFT_06264 at 45.374 kb on + strand, within H281DRAFT_06264 at 45.906 kb on + strand at 45.907 kb on - strand at 45.908 kb on + strand at 45.908 kb on + strand at 45.908 kb on + strand at 45.908 kb on + strand at 45.908 kb on + strand at 45.908 kb on + strand at 45.908 kb on + strand at 45.909 kb on - strand at 45.909 kb on - strand at 45.909 kb on - strand at 45.909 kb on - strand at 45.909 kb on - strand at 45.958 kb on + strand at 45.958 kb on + strand at 45.962 kb on + strand at 45.984 kb on + strand at 45.984 kb on + strand at 45.985 kb on - strand at 46.076 kb on - strand at 46.135 kb on + strand, within H281DRAFT_06265 at 46.135 kb on + strand, within H281DRAFT_06265 at 46.135 kb on + strand, within H281DRAFT_06265 at 46.135 kb on + strand, within H281DRAFT_06265 at 46.145 kb on - strand, within H281DRAFT_06265 at 46.145 kb on - strand, within H281DRAFT_06265 at 46.160 kb on - strand, within H281DRAFT_06265 at 46.160 kb on - strand, within H281DRAFT_06265 at 46.246 kb on + strand, within H281DRAFT_06265 at 46.247 kb on - strand, within H281DRAFT_06265 at 46.261 kb on + strand, within H281DRAFT_06265 at 46.261 kb on + strand, within H281DRAFT_06265 at 46.261 kb on + strand, within H281DRAFT_06265 at 46.261 kb on + strand, within H281DRAFT_06265 at 46.261 kb on + strand, within H281DRAFT_06265 at 46.261 kb on + strand, within H281DRAFT_06265 at 46.262 kb on - strand, within H281DRAFT_06265 at 46.262 kb on - strand, within H281DRAFT_06265 at 46.262 kb on - strand, within H281DRAFT_06265 at 46.262 kb on - strand, within H281DRAFT_06265 at 46.285 kb on + strand, within H281DRAFT_06265 at 46.285 kb on + strand, within H281DRAFT_06265 at 46.286 kb on - strand, within H281DRAFT_06265 at 46.286 kb on - strand, within H281DRAFT_06265 at 46.329 kb on - strand, within H281DRAFT_06265 at 46.386 kb on + strand, within H281DRAFT_06265 at 46.387 kb on - strand, within H281DRAFT_06265 at 46.387 kb on - strand, within H281DRAFT_06265 at 46.495 kb on + strand, within H281DRAFT_06265 at 46.496 kb on - strand, within H281DRAFT_06265 at 46.602 kb on + strand at 46.659 kb on + strand at 46.660 kb on - strand at 46.660 kb on - strand at 47.001 kb on - strand, within H281DRAFT_06266 at 47.001 kb on - strand at 47.045 kb on + strand, within H281DRAFT_06266 at 47.269 kb on + strand, within H281DRAFT_06266 at 47.269 kb on + strand, within H281DRAFT_06266 at 47.269 kb on + strand, within H281DRAFT_06266 at 47.269 kb on + strand, within H281DRAFT_06266 at 47.279 kb on + strand, within H281DRAFT_06266 at 47.280 kb on - strand, within H281DRAFT_06266 at 47.307 kb on - strand, within H281DRAFT_06266 at 47.430 kb on + strand at 47.476 kb on + strand at 47.542 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 1x remove 45,109 - H281DRAFT_06264 0.24 -1.4 45,109 - H281DRAFT_06264 0.24 -3.4 45,189 + H281DRAFT_06264 0.31 -3.5 45,374 + H281DRAFT_06264 0.48 -3.6 45,906 + -3.5 45,907 - -3.9 45,908 + -3.2 45,908 + -3.3 45,908 + -3.8 45,908 + -4.4 45,908 + -4.1 45,908 + -2.9 45,908 + -2.2 45,909 - -3.2 45,909 - -4.6 45,909 - -2.6 45,909 - -2.3 45,909 - -4.3 45,958 + -0.9 45,958 + -0.3 45,962 + +0.0 45,984 + +0.3 45,984 + +0.7 45,985 - +0.7 46,076 - -0.8 46,135 + H281DRAFT_06265 0.16 +1.4 46,135 + H281DRAFT_06265 0.16 -0.1 46,135 + H281DRAFT_06265 0.16 +0.2 46,135 + H281DRAFT_06265 0.16 +0.1 46,145 - H281DRAFT_06265 0.18 +0.2 46,145 - H281DRAFT_06265 0.18 +0.0 46,160 - H281DRAFT_06265 0.21 +0.4 46,160 - H281DRAFT_06265 0.21 -0.3 46,246 + H281DRAFT_06265 0.36 -1.1 46,247 - H281DRAFT_06265 0.36 +0.2 46,261 + H281DRAFT_06265 0.39 +1.0 46,261 + H281DRAFT_06265 0.39 +0.3 46,261 + H281DRAFT_06265 0.39 +0.5 46,261 + H281DRAFT_06265 0.39 +0.2 46,261 + H281DRAFT_06265 0.39 -0.6 46,261 + H281DRAFT_06265 0.39 +0.1 46,262 - H281DRAFT_06265 0.39 +1.6 46,262 - H281DRAFT_06265 0.39 -0.2 46,262 - H281DRAFT_06265 0.39 +0.3 46,262 - H281DRAFT_06265 0.39 +0.3 46,285 + H281DRAFT_06265 0.43 -2.0 46,285 + H281DRAFT_06265 0.43 +0.5 46,286 - H281DRAFT_06265 0.43 +0.6 46,286 - H281DRAFT_06265 0.43 +0.5 46,329 - H281DRAFT_06265 0.51 +0.0 46,386 + H281DRAFT_06265 0.61 +0.1 46,387 - H281DRAFT_06265 0.61 -0.4 46,387 - H281DRAFT_06265 0.61 +0.8 46,495 + H281DRAFT_06265 0.81 +0.4 46,496 - H281DRAFT_06265 0.81 +0.1 46,602 + +0.6 46,659 + +0.8 46,660 - +0.3 46,660 - -0.1 47,001 - H281DRAFT_06266 0.42 -2.9 47,001 - -1.4 47,045 + H281DRAFT_06266 0.48 -0.0 47,269 + H281DRAFT_06266 0.78 +1.4 47,269 + H281DRAFT_06266 0.78 +0.0 47,269 + H281DRAFT_06266 0.78 -3.2 47,269 + H281DRAFT_06266 0.78 -2.0 47,279 + H281DRAFT_06266 0.80 -2.0 47,280 - H281DRAFT_06266 0.80 -2.0 47,307 - H281DRAFT_06266 0.83 -1.4 47,430 + -1.0 47,476 + -1.3 47,542 + -0.5
Or see this region's nucleotide sequence