Experiment: Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 1x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_06071 and H281DRAFT_06072 are separated by 405 nucleotides H281DRAFT_06072 and H281DRAFT_06073 are separated by 86 nucleotides H281DRAFT_06073 and H281DRAFT_06074 are separated by 86 nucleotides H281DRAFT_06074 and H281DRAFT_06075 are separated by 5 nucleotides
H281DRAFT_06071: H281DRAFT_06071 - aspartate semialdehyde dehydrogenase, at 86,968 to 88,089
_06071
H281DRAFT_06072: H281DRAFT_06072 - 3-isopropylmalate dehydrogenase, at 88,495 to 89,562
_06072
H281DRAFT_06073: H281DRAFT_06073 - 3-isopropylmalate dehydratase, small subunit, at 89,649 to 90,302
_06073
H281DRAFT_06074: H281DRAFT_06074 - entericidin A, at 90,389 to 90,547
_06074
H281DRAFT_06075: H281DRAFT_06075 - 3-isopropylmalate dehydratase, large subunit, at 90,553 to 91,962
_06075
Position (kb) 88
89
90 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 88.307 kb on - strand at 88.307 kb on - strand at 88.307 kb on - strand at 88.312 kb on - strand at 88.312 kb on - strand at 88.365 kb on + strand at 88.469 kb on + strand at 88.493 kb on - strand at 88.496 kb on + strand at 88.496 kb on + strand at 88.496 kb on + strand at 88.497 kb on - strand at 88.647 kb on - strand, within H281DRAFT_06072 at 88.739 kb on + strand, within H281DRAFT_06072 at 88.740 kb on - strand, within H281DRAFT_06072 at 88.740 kb on - strand, within H281DRAFT_06072 at 88.740 kb on - strand, within H281DRAFT_06072 at 88.904 kb on + strand at 88.905 kb on - strand, within H281DRAFT_06072 at 88.905 kb on - strand, within H281DRAFT_06072 at 88.905 kb on - strand, within H281DRAFT_06072 at 88.931 kb on + strand, within H281DRAFT_06072 at 89.159 kb on + strand, within H281DRAFT_06072 at 89.159 kb on + strand, within H281DRAFT_06072 at 89.159 kb on + strand, within H281DRAFT_06072 at 89.605 kb on + strand at 89.605 kb on + strand at 89.606 kb on - strand at 89.650 kb on + strand at 89.704 kb on + strand at 89.770 kb on + strand, within H281DRAFT_06073 at 89.771 kb on - strand, within H281DRAFT_06073 at 89.875 kb on + strand, within H281DRAFT_06073 at 89.876 kb on - strand, within H281DRAFT_06073 at 89.954 kb on - strand, within H281DRAFT_06073 at 90.296 kb on + strand at 90.297 kb on - strand at 90.497 kb on - strand, within H281DRAFT_06074 at 90.497 kb on - strand, within H281DRAFT_06074 at 90.497 kb on - strand, within H281DRAFT_06074
Per-strain Table
Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 1x remove 88,307 - +0.8 88,307 - -0.2 88,307 - +0.6 88,312 - +0.4 88,312 - +0.0 88,365 + -2.3 88,469 + -0.5 88,493 - -3.1 88,496 + +1.1 88,496 + +0.1 88,496 + +0.5 88,497 - -2.8 88,647 - H281DRAFT_06072 0.14 -3.5 88,739 + H281DRAFT_06072 0.23 -2.6 88,740 - H281DRAFT_06072 0.23 -4.3 88,740 - H281DRAFT_06072 0.23 -2.5 88,740 - H281DRAFT_06072 0.23 -3.0 88,904 + +1.3 88,905 - H281DRAFT_06072 0.38 -3.1 88,905 - H281DRAFT_06072 0.38 -1.8 88,905 - H281DRAFT_06072 0.38 -3.2 88,931 + H281DRAFT_06072 0.41 -1.3 89,159 + H281DRAFT_06072 0.62 -2.3 89,159 + H281DRAFT_06072 0.62 -3.1 89,159 + H281DRAFT_06072 0.62 -3.4 89,605 + -2.7 89,605 + -2.1 89,606 - +0.1 89,650 + -3.7 89,704 + -2.2 89,770 + H281DRAFT_06073 0.19 -1.5 89,771 - H281DRAFT_06073 0.19 -0.7 89,875 + H281DRAFT_06073 0.35 -2.6 89,876 - H281DRAFT_06073 0.35 -3.8 89,954 - H281DRAFT_06073 0.47 -2.8 90,296 + -2.9 90,297 - -4.0 90,497 - H281DRAFT_06074 0.68 -0.6 90,497 - H281DRAFT_06074 0.68 -0.3 90,497 - H281DRAFT_06074 0.68 -1.4
Or see this region's nucleotide sequence