Experiment: Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 1x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_06064 and H281DRAFT_06065 are separated by 79 nucleotides H281DRAFT_06065 and H281DRAFT_06066 overlap by 4 nucleotides H281DRAFT_06066 and H281DRAFT_06067 are separated by 11 nucleotides
H281DRAFT_06064: H281DRAFT_06064 - acetyl-CoA carboxylase carboxyltransferase subunit beta /acetyl-CoA carboxylase carboxyltransferase subunit alpha, at 78,995 to 79,867
_06064
H281DRAFT_06065: H281DRAFT_06065 - tryptophan synthase, alpha chain, at 79,947 to 80,813
_06065
H281DRAFT_06066: H281DRAFT_06066 - site-specific DNA-methyltransferase (adenine-specific), at 80,810 to 81,721
_06066
H281DRAFT_06067: H281DRAFT_06067 - tryptophan synthase, beta chain, at 81,733 to 82,926
_06067
Position (kb) 79
80
81 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 80.233 kb on + strand, within H281DRAFT_06065 at 80.233 kb on + strand, within H281DRAFT_06065 at 80.234 kb on - strand, within H281DRAFT_06065 at 80.234 kb on - strand, within H281DRAFT_06065 at 80.234 kb on - strand, within H281DRAFT_06065 at 80.234 kb on - strand, within H281DRAFT_06065 at 80.234 kb on - strand, within H281DRAFT_06065 at 80.234 kb on - strand at 80.234 kb on - strand, within H281DRAFT_06065 at 80.236 kb on + strand, within H281DRAFT_06065 at 80.254 kb on - strand, within H281DRAFT_06065 at 80.348 kb on + strand, within H281DRAFT_06065 at 80.455 kb on + strand, within H281DRAFT_06065 at 80.505 kb on + strand, within H281DRAFT_06065 at 80.506 kb on - strand, within H281DRAFT_06065 at 80.910 kb on + strand, within H281DRAFT_06066 at 81.130 kb on + strand, within H281DRAFT_06066 at 81.132 kb on + strand, within H281DRAFT_06066 at 81.132 kb on + strand, within H281DRAFT_06066 at 81.133 kb on - strand, within H281DRAFT_06066 at 81.133 kb on - strand, within H281DRAFT_06066 at 81.403 kb on + strand, within H281DRAFT_06066 at 81.405 kb on + strand, within H281DRAFT_06066 at 81.405 kb on + strand, within H281DRAFT_06066 at 81.406 kb on - strand, within H281DRAFT_06066 at 81.406 kb on - strand, within H281DRAFT_06066 at 81.406 kb on - strand, within H281DRAFT_06066 at 81.406 kb on - strand, within H281DRAFT_06066 at 81.406 kb on - strand, within H281DRAFT_06066 at 81.525 kb on + strand, within H281DRAFT_06066 at 81.575 kb on + strand, within H281DRAFT_06066 at 81.576 kb on - strand, within H281DRAFT_06066 at 81.576 kb on - strand, within H281DRAFT_06066 at 81.576 kb on - strand, within H281DRAFT_06066 at 81.677 kb on + strand at 81.677 kb on + strand at 81.678 kb on - strand at 81.765 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 1x remove 80,233 + H281DRAFT_06065 0.33 -2.7 80,233 + H281DRAFT_06065 0.33 -1.3 80,234 - H281DRAFT_06065 0.33 -1.5 80,234 - H281DRAFT_06065 0.33 -1.4 80,234 - H281DRAFT_06065 0.33 -0.3 80,234 - H281DRAFT_06065 0.33 -1.0 80,234 - H281DRAFT_06065 0.33 -2.9 80,234 - -0.3 80,234 - H281DRAFT_06065 0.33 -0.7 80,236 + H281DRAFT_06065 0.33 -0.5 80,254 - H281DRAFT_06065 0.35 -1.6 80,348 + H281DRAFT_06065 0.46 +0.3 80,455 + H281DRAFT_06065 0.59 -1.3 80,505 + H281DRAFT_06065 0.64 +1.0 80,506 - H281DRAFT_06065 0.64 -1.9 80,910 + H281DRAFT_06066 0.11 -1.7 81,130 + H281DRAFT_06066 0.35 -3.1 81,132 + H281DRAFT_06066 0.35 -2.1 81,132 + H281DRAFT_06066 0.35 -0.0 81,133 - H281DRAFT_06066 0.35 +0.6 81,133 - H281DRAFT_06066 0.35 -0.1 81,403 + H281DRAFT_06066 0.65 +0.0 81,405 + H281DRAFT_06066 0.65 -2.6 81,405 + H281DRAFT_06066 0.65 -0.7 81,406 - H281DRAFT_06066 0.65 -0.7 81,406 - H281DRAFT_06066 0.65 -0.2 81,406 - H281DRAFT_06066 0.65 +0.3 81,406 - H281DRAFT_06066 0.65 -0.3 81,406 - H281DRAFT_06066 0.65 +0.1 81,525 + H281DRAFT_06066 0.78 -0.7 81,575 + H281DRAFT_06066 0.84 -1.5 81,576 - H281DRAFT_06066 0.84 -0.5 81,576 - H281DRAFT_06066 0.84 -1.3 81,576 - H281DRAFT_06066 0.84 -0.4 81,677 + -1.7 81,677 + -2.0 81,678 - +0.1 81,765 + -1.4
Or see this region's nucleotide sequence