Experiment: Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 1x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_06060 and H281DRAFT_06061 are separated by 144 nucleotides H281DRAFT_06061 and H281DRAFT_06062 are separated by 7 nucleotides H281DRAFT_06062 and H281DRAFT_06063 are separated by 29 nucleotides
H281DRAFT_06060: H281DRAFT_06060 - amidophosphoribosyltransferase, at 74,313 to 75,863
_06060
H281DRAFT_06061: H281DRAFT_06061 - membrane protein required for colicin V production, at 76,008 to 76,502
_06061
H281DRAFT_06062: H281DRAFT_06062 - DedD protein, at 76,510 to 77,469
_06062
H281DRAFT_06063: H281DRAFT_06063 - dihydrofolate synthase / folylpolyglutamate synthase, at 77,499 to 78,851
_06063
Position (kb) 76
77
78 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2 at 75.595 kb on + strand, within H281DRAFT_06060 at 75.595 kb on + strand, within H281DRAFT_06060 at 75.596 kb on - strand, within H281DRAFT_06060 at 75.811 kb on + strand at 75.812 kb on - strand at 75.843 kb on + strand at 75.844 kb on - strand at 75.844 kb on - strand at 75.881 kb on + strand at 75.923 kb on + strand at 75.950 kb on + strand at 75.950 kb on + strand at 75.950 kb on + strand at 75.950 kb on + strand at 75.951 kb on - strand at 75.951 kb on - strand at 75.951 kb on - strand at 76.021 kb on + strand at 76.021 kb on + strand at 76.056 kb on + strand at 76.056 kb on + strand at 76.056 kb on + strand at 76.057 kb on - strand at 76.057 kb on - strand at 76.079 kb on - strand, within H281DRAFT_06061 at 76.347 kb on - strand, within H281DRAFT_06061 at 76.347 kb on - strand, within H281DRAFT_06061 at 76.347 kb on - strand at 76.348 kb on + strand, within H281DRAFT_06061 at 76.348 kb on + strand, within H281DRAFT_06061 at 76.348 kb on + strand at 76.349 kb on - strand, within H281DRAFT_06061 at 76.349 kb on - strand, within H281DRAFT_06061 at 76.477 kb on - strand at 76.477 kb on - strand at 76.483 kb on + strand at 76.483 kb on + strand at 76.484 kb on - strand at 76.484 kb on - strand at 76.511 kb on + strand at 76.511 kb on + strand at 76.656 kb on + strand, within H281DRAFT_06062 at 76.656 kb on + strand, within H281DRAFT_06062 at 76.657 kb on - strand, within H281DRAFT_06062 at 76.659 kb on - strand, within H281DRAFT_06062 at 76.659 kb on - strand, within H281DRAFT_06062 at 76.659 kb on - strand, within H281DRAFT_06062 at 77.067 kb on + strand, within H281DRAFT_06062 at 77.517 kb on - strand at 77.517 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 1x remove 75,595 + H281DRAFT_06060 0.83 -4.1 75,595 + H281DRAFT_06060 0.83 -3.9 75,596 - H281DRAFT_06060 0.83 -4.2 75,811 + -1.1 75,812 - +0.3 75,843 + -2.3 75,844 - -3.3 75,844 - -4.6 75,881 + -4.7 75,923 + -3.7 75,950 + -2.6 75,950 + -4.2 75,950 + -4.1 75,950 + -2.3 75,951 - -1.0 75,951 - -0.1 75,951 - +0.0 76,021 + -3.4 76,021 + -3.7 76,056 + -5.0 76,056 + -3.5 76,056 + -2.7 76,057 - -0.1 76,057 - -0.2 76,079 - H281DRAFT_06061 0.14 +1.3 76,347 - H281DRAFT_06061 0.68 +0.0 76,347 - H281DRAFT_06061 0.68 +0.4 76,347 - +2.3 76,348 + H281DRAFT_06061 0.69 -2.6 76,348 + H281DRAFT_06061 0.69 -4.2 76,348 + +0.7 76,349 - H281DRAFT_06061 0.69 -0.1 76,349 - H281DRAFT_06061 0.69 -0.0 76,477 - +1.2 76,477 - +0.5 76,483 + +0.6 76,483 + -2.4 76,484 - -0.2 76,484 - -0.9 76,511 + -2.6 76,511 + -2.4 76,656 + H281DRAFT_06062 0.15 -3.1 76,656 + H281DRAFT_06062 0.15 -2.4 76,657 - H281DRAFT_06062 0.15 +0.2 76,659 - H281DRAFT_06062 0.16 -1.3 76,659 - H281DRAFT_06062 0.16 -0.5 76,659 - H281DRAFT_06062 0.16 +0.3 77,067 + H281DRAFT_06062 0.58 -2.1 77,517 - +0.5 77,517 - -0.6
Or see this region's nucleotide sequence