Experiment: Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 1x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_06057 and H281DRAFT_06058 are separated by 33 nucleotides H281DRAFT_06058 and H281DRAFT_06059 are separated by 124 nucleotides H281DRAFT_06059 and H281DRAFT_06060 are separated by 323 nucleotides
H281DRAFT_06057: H281DRAFT_06057 - FKBP-type peptidyl-prolyl cis-trans isomerase FkpA, at 71,517 to 71,858
_06057
H281DRAFT_06058: H281DRAFT_06058 - transcriptional regulator, AraC family, at 71,892 to 72,674
_06058
H281DRAFT_06059: H281DRAFT_06059 - O-succinylhomoserine sulfhydrylase, at 72,799 to 73,989
_06059
H281DRAFT_06060: H281DRAFT_06060 - amidophosphoribosyltransferase, at 74,313 to 75,863
_06060
Position (kb) 72
73
74 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2
3
4 at 71.857 kb on - strand at 71.857 kb on - strand at 72.084 kb on + strand, within H281DRAFT_06058 at 72.085 kb on - strand, within H281DRAFT_06058 at 72.198 kb on - strand, within H281DRAFT_06058 at 72.528 kb on - strand, within H281DRAFT_06058 at 72.541 kb on + strand, within H281DRAFT_06058 at 72.541 kb on + strand at 72.611 kb on + strand at 72.611 kb on + strand at 72.612 kb on - strand at 72.612 kb on - strand at 72.770 kb on + strand at 72.770 kb on + strand at 72.771 kb on - strand at 72.771 kb on - strand at 72.771 kb on - strand at 72.771 kb on - strand at 72.949 kb on - strand, within H281DRAFT_06059 at 72.949 kb on - strand, within H281DRAFT_06059 at 73.133 kb on + strand, within H281DRAFT_06059 at 73.133 kb on + strand, within H281DRAFT_06059 at 73.134 kb on - strand, within H281DRAFT_06059 at 73.611 kb on + strand, within H281DRAFT_06059 at 73.827 kb on - strand, within H281DRAFT_06059 at 73.832 kb on + strand, within H281DRAFT_06059 at 73.832 kb on + strand, within H281DRAFT_06059 at 73.832 kb on + strand, within H281DRAFT_06059 at 73.832 kb on + strand at 73.832 kb on + strand, within H281DRAFT_06059 at 73.832 kb on + strand, within H281DRAFT_06059 at 73.833 kb on - strand, within H281DRAFT_06059 at 73.835 kb on + strand, within H281DRAFT_06059 at 73.835 kb on + strand, within H281DRAFT_06059 at 73.835 kb on + strand, within H281DRAFT_06059 at 73.836 kb on - strand, within H281DRAFT_06059 at 73.836 kb on - strand, within H281DRAFT_06059 at 73.906 kb on + strand at 73.907 kb on - strand at 74.036 kb on + strand at 74.040 kb on - strand at 74.049 kb on + strand at 74.049 kb on + strand at 74.049 kb on + strand at 74.050 kb on - strand at 74.050 kb on - strand at 74.134 kb on + strand at 74.135 kb on - strand at 74.191 kb on + strand at 74.192 kb on - strand at 74.252 kb on + strand at 74.252 kb on + strand at 74.441 kb on - strand at 74.467 kb on + strand at 74.468 kb on - strand, within H281DRAFT_06060 at 74.554 kb on + strand, within H281DRAFT_06060 at 74.554 kb on + strand, within H281DRAFT_06060 at 74.647 kb on + strand, within H281DRAFT_06060 at 74.648 kb on - strand, within H281DRAFT_06060 at 74.876 kb on - strand, within H281DRAFT_06060
Per-strain Table
Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 1x remove 71,857 - +0.5 71,857 - +0.1 72,084 + H281DRAFT_06058 0.25 -0.3 72,085 - H281DRAFT_06058 0.25 +2.4 72,198 - H281DRAFT_06058 0.39 +0.1 72,528 - H281DRAFT_06058 0.81 -0.7 72,541 + H281DRAFT_06058 0.83 +0.2 72,541 + +2.8 72,611 + +4.6 72,611 + -0.1 72,612 - -0.6 72,612 - +0.3 72,770 + +0.7 72,770 + +0.7 72,771 - -0.5 72,771 - +0.5 72,771 - +0.9 72,771 - +0.2 72,949 - H281DRAFT_06059 0.13 -4.3 72,949 - H281DRAFT_06059 0.13 -2.7 73,133 + H281DRAFT_06059 0.28 +0.3 73,133 + H281DRAFT_06059 0.28 -1.6 73,134 - H281DRAFT_06059 0.28 -3.3 73,611 + H281DRAFT_06059 0.68 -4.6 73,827 - H281DRAFT_06059 0.86 -3.0 73,832 + H281DRAFT_06059 0.87 -4.6 73,832 + H281DRAFT_06059 0.87 -3.4 73,832 + H281DRAFT_06059 0.87 -0.7 73,832 + +0.3 73,832 + H281DRAFT_06059 0.87 -1.3 73,832 + H281DRAFT_06059 0.87 -1.9 73,833 - H281DRAFT_06059 0.87 -2.1 73,835 + H281DRAFT_06059 0.87 -3.1 73,835 + H281DRAFT_06059 0.87 -2.1 73,835 + H281DRAFT_06059 0.87 -2.0 73,836 - H281DRAFT_06059 0.87 -3.7 73,836 - H281DRAFT_06059 0.87 -1.3 73,906 + -2.3 73,907 - -4.0 74,036 + -2.1 74,040 - +0.8 74,049 + -1.6 74,049 + +1.5 74,049 + -1.8 74,050 - -0.4 74,050 - +0.7 74,134 + -0.6 74,135 - -1.4 74,191 + -0.7 74,192 - +1.8 74,252 + +0.8 74,252 + +1.3 74,441 - -2.3 74,467 + -4.3 74,468 - H281DRAFT_06060 0.10 -4.6 74,554 + H281DRAFT_06060 0.16 -1.9 74,554 + H281DRAFT_06060 0.16 -4.6 74,647 + H281DRAFT_06060 0.22 -3.1 74,648 - H281DRAFT_06060 0.22 -1.9 74,876 - H281DRAFT_06060 0.36 -4.9
Or see this region's nucleotide sequence