Experiment: Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 1x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_06038 and H281DRAFT_06039 are separated by 1 nucleotides H281DRAFT_06039 and H281DRAFT_06040 are separated by 41 nucleotides H281DRAFT_06040 and H281DRAFT_06041 are separated by 154 nucleotides H281DRAFT_06041 and H281DRAFT_06042 are separated by 56 nucleotides
H281DRAFT_06038: H281DRAFT_06038 - molybdate transport system permease protein, at 42,578 to 43,252
_06038
H281DRAFT_06039: H281DRAFT_06039 - molybdate transport system ATP-binding protein, at 43,254 to 43,955
_06039
H281DRAFT_06040: H281DRAFT_06040 - molybdate transport system regulatory protein, at 43,997 to 44,833
_06040
H281DRAFT_06041: H281DRAFT_06041 - Tautomerase enzyme, at 44,988 to 45,371
_06041
H281DRAFT_06042: H281DRAFT_06042 - transcriptional regulator, LysR family, at 45,428 to 46,321
_06042
Position (kb) 43
44
45 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 43.253 kb on + strand at 43.254 kb on - strand at 43.435 kb on + strand, within H281DRAFT_06039 at 43.436 kb on - strand, within H281DRAFT_06039 at 43.436 kb on - strand, within H281DRAFT_06039 at 43.642 kb on + strand, within H281DRAFT_06039 at 43.827 kb on - strand, within H281DRAFT_06039 at 44.016 kb on - strand at 44.016 kb on - strand at 44.664 kb on + strand, within H281DRAFT_06040 at 44.664 kb on + strand, within H281DRAFT_06040 at 44.664 kb on + strand, within H281DRAFT_06040 at 44.664 kb on + strand, within H281DRAFT_06040 at 44.664 kb on + strand, within H281DRAFT_06040 at 44.664 kb on + strand, within H281DRAFT_06040 at 44.664 kb on + strand, within H281DRAFT_06040 at 44.665 kb on - strand, within H281DRAFT_06040 at 44.665 kb on - strand, within H281DRAFT_06040 at 44.755 kb on + strand at 44.837 kb on + strand at 44.838 kb on - strand at 44.875 kb on + strand at 44.876 kb on - strand at 44.877 kb on + strand at 44.878 kb on - strand at 44.878 kb on - strand at 44.998 kb on + strand at 45.116 kb on - strand, within H281DRAFT_06041 at 45.116 kb on - strand, within H281DRAFT_06041 at 45.116 kb on - strand, within H281DRAFT_06041 at 45.116 kb on - strand, within H281DRAFT_06041 at 45.160 kb on - strand, within H281DRAFT_06041 at 45.326 kb on - strand, within H281DRAFT_06041 at 45.362 kb on + strand at 45.395 kb on + strand at 45.395 kb on + strand at 45.395 kb on + strand at 45.395 kb on + strand at 45.395 kb on + strand at 45.396 kb on - strand at 45.396 kb on - strand at 45.410 kb on + strand at 45.410 kb on + strand at 45.410 kb on + strand at 45.411 kb on - strand at 45.411 kb on - strand at 45.457 kb on - strand at 45.507 kb on + strand at 45.508 kb on - strand at 45.508 kb on - strand at 45.508 kb on - strand at 45.508 kb on - strand at 45.508 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 1x remove 43,253 + -0.1 43,254 - +0.3 43,435 + H281DRAFT_06039 0.26 -3.3 43,436 - H281DRAFT_06039 0.26 -2.4 43,436 - H281DRAFT_06039 0.26 -1.5 43,642 + H281DRAFT_06039 0.55 +1.3 43,827 - H281DRAFT_06039 0.82 -1.0 44,016 - +0.4 44,016 - +1.5 44,664 + H281DRAFT_06040 0.80 +0.3 44,664 + H281DRAFT_06040 0.80 +0.2 44,664 + H281DRAFT_06040 0.80 +1.2 44,664 + H281DRAFT_06040 0.80 +0.2 44,664 + H281DRAFT_06040 0.80 -0.2 44,664 + H281DRAFT_06040 0.80 +0.8 44,664 + H281DRAFT_06040 0.80 -0.0 44,665 - H281DRAFT_06040 0.80 +0.4 44,665 - H281DRAFT_06040 0.80 +0.2 44,755 + +0.2 44,837 + +0.0 44,838 - -1.4 44,875 + +0.8 44,876 - -0.3 44,877 + +0.3 44,878 - -0.6 44,878 - +0.6 44,998 + +0.4 45,116 - H281DRAFT_06041 0.33 -0.1 45,116 - H281DRAFT_06041 0.33 +1.0 45,116 - H281DRAFT_06041 0.33 +0.4 45,116 - H281DRAFT_06041 0.33 +0.5 45,160 - H281DRAFT_06041 0.45 +0.1 45,326 - H281DRAFT_06041 0.88 +0.5 45,362 + +0.2 45,395 + +1.1 45,395 + +0.3 45,395 + +0.3 45,395 + +0.3 45,395 + +0.1 45,396 - -0.3 45,396 - +0.4 45,410 + -0.0 45,410 + +0.3 45,410 + -1.8 45,411 - -0.1 45,411 - +0.9 45,457 - -0.7 45,507 + -0.0 45,508 - +0.3 45,508 - -0.2 45,508 - +2.3 45,508 - +0.8 45,508 - -1.3
Or see this region's nucleotide sequence