Experiment: Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 1x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_06002 and H281DRAFT_06003 are separated by 271 nucleotides H281DRAFT_06003 and H281DRAFT_06004 are separated by 84 nucleotides H281DRAFT_06004 and H281DRAFT_06005 are separated by 440 nucleotides
H281DRAFT_06002: H281DRAFT_06002 - NADPH:quinone reductase, at 3,183 to 4,136
_06002
H281DRAFT_06003: H281DRAFT_06003 - Pimeloyl-ACP methyl ester carboxylesterase, at 4,408 to 5,202
_06003
H281DRAFT_06004: H281DRAFT_06004 - protein of unknown function (DUF4148), at 5,287 to 5,637
_06004
H281DRAFT_06005: H281DRAFT_06005 - methyltransferase, FkbM family, at 6,078 to 6,788
_06005
Position (kb) 4
5
6 Strain fitness (log2 ratio) -2
-1
0
1
2 at 3.586 kb on + strand, within H281DRAFT_06002 at 3.974 kb on - strand, within H281DRAFT_06002 at 4.081 kb on + strand at 4.127 kb on + strand at 4.260 kb on + strand at 4.261 kb on - strand at 4.402 kb on - strand at 4.526 kb on + strand, within H281DRAFT_06003 at 4.736 kb on + strand, within H281DRAFT_06003 at 4.904 kb on + strand, within H281DRAFT_06003 at 4.905 kb on - strand, within H281DRAFT_06003 at 4.908 kb on + strand, within H281DRAFT_06003 at 5.317 kb on - strand at 6.079 kb on + strand at 6.079 kb on + strand at 6.108 kb on - strand at 6.112 kb on - strand at 6.152 kb on + strand, within H281DRAFT_06005 at 6.173 kb on - strand, within H281DRAFT_06005
Per-strain Table
Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 1x remove 3,586 + H281DRAFT_06002 0.42 +0.2 3,974 - H281DRAFT_06002 0.83 +0.2 4,081 + -1.5 4,127 + +0.2 4,260 + -1.1 4,261 - -0.1 4,402 - +0.1 4,526 + H281DRAFT_06003 0.15 -0.1 4,736 + H281DRAFT_06003 0.41 +0.1 4,904 + H281DRAFT_06003 0.62 -0.6 4,905 - H281DRAFT_06003 0.63 -1.7 4,908 + H281DRAFT_06003 0.63 -2.0 5,317 - -0.2 6,079 + -0.0 6,079 + +2.3 6,108 - +0.9 6,112 - -0.3 6,152 + H281DRAFT_06005 0.10 +0.3 6,173 - H281DRAFT_06005 0.13 +0.3
Or see this region's nucleotide sequence