Experiment: Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 1x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_05963 and H281DRAFT_05964 are separated by 164 nucleotides H281DRAFT_05964 and H281DRAFT_05965 are separated by 81 nucleotides
H281DRAFT_05963: H281DRAFT_05963 - transcriptional regulator, IclR family, at 104,487 to 105,197
_05963
H281DRAFT_05964: H281DRAFT_05964 - D-galactonate transporter, at 105,362 to 106,666
_05964
H281DRAFT_05965: H281DRAFT_05965 - Ribulose-5-phosphate 4-epimerase/Fuculose-1-phosphate aldolase, at 106,748 to 107,617
_05965
Position (kb) 105
106
107 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 104.386 kb on - strand at 104.697 kb on + strand, within H281DRAFT_05963 at 104.697 kb on + strand, within H281DRAFT_05963 at 104.712 kb on + strand, within H281DRAFT_05963 at 104.712 kb on + strand, within H281DRAFT_05963 at 104.793 kb on + strand, within H281DRAFT_05963 at 104.796 kb on + strand, within H281DRAFT_05963 at 105.455 kb on - strand at 106.047 kb on + strand, within H281DRAFT_05964 at 106.245 kb on + strand, within H281DRAFT_05964 at 106.472 kb on + strand, within H281DRAFT_05964 at 106.472 kb on + strand, within H281DRAFT_05964 at 106.532 kb on + strand, within H281DRAFT_05964 at 106.563 kb on + strand at 106.788 kb on + strand at 106.788 kb on + strand at 106.818 kb on + strand at 107.101 kb on - strand, within H281DRAFT_05965 at 107.122 kb on + strand, within H281DRAFT_05965 at 107.123 kb on - strand, within H281DRAFT_05965 at 107.256 kb on + strand, within H281DRAFT_05965 at 107.282 kb on - strand, within H281DRAFT_05965 at 107.350 kb on - strand, within H281DRAFT_05965 at 107.350 kb on - strand, within H281DRAFT_05965 at 107.401 kb on - strand, within H281DRAFT_05965
Per-strain Table
Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 1x remove 104,386 - -0.2 104,697 + H281DRAFT_05963 0.30 -0.3 104,697 + H281DRAFT_05963 0.30 +0.5 104,712 + H281DRAFT_05963 0.32 -1.5 104,712 + H281DRAFT_05963 0.32 +0.3 104,793 + H281DRAFT_05963 0.43 -0.1 104,796 + H281DRAFT_05963 0.43 -0.5 105,455 - -3.9 106,047 + H281DRAFT_05964 0.52 +0.5 106,245 + H281DRAFT_05964 0.68 -0.3 106,472 + H281DRAFT_05964 0.85 -1.0 106,472 + H281DRAFT_05964 0.85 -0.2 106,532 + H281DRAFT_05964 0.90 -0.9 106,563 + -0.1 106,788 + +1.4 106,788 + +0.6 106,818 + -0.0 107,101 - H281DRAFT_05965 0.41 +0.6 107,122 + H281DRAFT_05965 0.43 +0.0 107,123 - H281DRAFT_05965 0.43 -0.3 107,256 + H281DRAFT_05965 0.58 -1.3 107,282 - H281DRAFT_05965 0.61 +0.0 107,350 - H281DRAFT_05965 0.69 +0.7 107,350 - H281DRAFT_05965 0.69 -0.2 107,401 - H281DRAFT_05965 0.75 +0.5
Or see this region's nucleotide sequence