Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_05715

Experiment: Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 1x

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_05713 and H281DRAFT_05714 are separated by 17 nucleotidesH281DRAFT_05714 and H281DRAFT_05715 are separated by 13 nucleotidesH281DRAFT_05715 and H281DRAFT_05716 are separated by 365 nucleotides H281DRAFT_05713: H281DRAFT_05713 - anthranilate phosphoribosyltransferase, at 131,967 to 132,998 _05713 H281DRAFT_05714: H281DRAFT_05714 - anthranilate synthase, component II, at 133,016 to 133,609 _05714 H281DRAFT_05715: H281DRAFT_05715 - anthranilate synthase, component I, at 133,623 to 135,116 _05715 H281DRAFT_05716: H281DRAFT_05716 - phosphoglycolate phosphatase, at 135,482 to 136,198 _05716 Position (kb) 133 134 135 136Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2 3at 132.716 kb on + strand, within H281DRAFT_05713at 132.716 kb on + strand, within H281DRAFT_05713at 132.716 kb on + strand, within H281DRAFT_05713at 132.726 kb on - strand, within H281DRAFT_05713at 132.867 kb on - strand, within H281DRAFT_05713at 133.138 kb on + strand, within H281DRAFT_05714at 133.139 kb on - strand, within H281DRAFT_05714at 133.525 kb on - strand, within H281DRAFT_05714at 133.557 kb on + strandat 133.557 kb on + strandat 133.572 kb on + strandat 133.572 kb on + strandat 133.572 kb on + strandat 133.572 kb on + strandat 133.573 kb on - strandat 133.573 kb on - strandat 133.573 kb on - strandat 133.587 kb on + strandat 133.587 kb on + strandat 133.588 kb on - strandat 133.753 kb on + strandat 133.753 kb on + strandat 133.753 kb on + strandat 133.753 kb on + strandat 133.753 kb on + strandat 133.754 kb on - strandat 133.754 kb on - strandat 133.826 kb on - strand, within H281DRAFT_05715at 133.952 kb on + strand, within H281DRAFT_05715at 134.213 kb on + strand, within H281DRAFT_05715at 134.213 kb on + strand, within H281DRAFT_05715at 134.290 kb on + strand, within H281DRAFT_05715at 134.290 kb on + strand, within H281DRAFT_05715at 134.293 kb on + strand, within H281DRAFT_05715at 134.293 kb on + strand, within H281DRAFT_05715at 134.294 kb on - strand, within H281DRAFT_05715at 134.294 kb on - strand, within H281DRAFT_05715at 134.296 kb on + strand, within H281DRAFT_05715at 134.296 kb on + strand, within H281DRAFT_05715at 134.296 kb on + strand, within H281DRAFT_05715at 134.296 kb on + strand, within H281DRAFT_05715at 134.296 kb on + strand, within H281DRAFT_05715at 134.296 kb on + strandat 134.297 kb on - strand, within H281DRAFT_05715at 134.297 kb on - strand, within H281DRAFT_05715at 134.297 kb on - strand, within H281DRAFT_05715at 134.297 kb on - strand, within H281DRAFT_05715at 134.297 kb on - strand, within H281DRAFT_05715at 134.297 kb on - strand, within H281DRAFT_05715at 134.297 kb on - strand, within H281DRAFT_05715at 134.297 kb on - strand, within H281DRAFT_05715at 134.297 kb on - strand, within H281DRAFT_05715at 134.302 kb on + strand, within H281DRAFT_05715at 134.302 kb on + strand, within H281DRAFT_05715at 134.302 kb on + strand, within H281DRAFT_05715at 134.303 kb on - strand, within H281DRAFT_05715at 134.303 kb on - strand, within H281DRAFT_05715at 134.335 kb on + strand, within H281DRAFT_05715at 134.416 kb on + strand, within H281DRAFT_05715at 134.416 kb on + strand, within H281DRAFT_05715at 134.417 kb on - strand, within H281DRAFT_05715at 134.446 kb on + strand, within H281DRAFT_05715at 134.446 kb on + strand, within H281DRAFT_05715at 134.447 kb on - strand, within H281DRAFT_05715at 134.471 kb on - strand, within H281DRAFT_05715at 134.471 kb on - strand, within H281DRAFT_05715at 134.471 kb on - strand, within H281DRAFT_05715at 134.471 kb on - strand, within H281DRAFT_05715at 134.566 kb on + strand, within H281DRAFT_05715at 134.567 kb on - strand, within H281DRAFT_05715at 134.593 kb on + strand, within H281DRAFT_05715at 134.594 kb on - strand, within H281DRAFT_05715at 134.605 kb on + strandat 134.620 kb on - strand, within H281DRAFT_05715at 134.620 kb on - strand, within H281DRAFT_05715at 134.696 kb on + strand, within H281DRAFT_05715at 134.697 kb on - strand, within H281DRAFT_05715at 134.719 kb on + strand, within H281DRAFT_05715at 134.720 kb on - strand, within H281DRAFT_05715at 134.720 kb on - strand, within H281DRAFT_05715at 134.720 kb on - strand, within H281DRAFT_05715at 134.743 kb on + strand, within H281DRAFT_05715at 134.744 kb on - strand, within H281DRAFT_05715at 134.869 kb on - strand, within H281DRAFT_05715at 135.016 kb on + strandat 135.017 kb on - strandat 135.068 kb on + strandat 135.068 kb on + strandat 135.129 kb on + strandat 135.129 kb on + strandat 135.129 kb on + strandat 135.129 kb on + strandat 135.133 kb on + strandat 135.133 kb on + strandat 135.133 kb on + strandat 135.133 kb on + strandat 135.133 kb on + strandat 135.134 kb on - strandat 135.134 kb on - strandat 135.134 kb on - strandat 135.268 kb on - strandat 135.268 kb on - strandat 135.278 kb on + strandat 135.279 kb on - strandat 135.279 kb on - strandat 135.345 kb on + strandat 135.378 kb on - strandat 135.436 kb on - strandat 135.539 kb on + strandat 135.539 kb on + strandat 135.539 kb on + strandat 135.539 kb on + strandat 135.540 kb on - strandat 135.540 kb on - strandat 135.541 kb on + strandat 135.541 kb on + strandat 135.541 kb on + strandat 135.542 kb on - strandat 135.542 kb on - strandat 135.542 kb on - strandat 135.555 kb on - strand, within H281DRAFT_05716at 135.565 kb on + strand, within H281DRAFT_05716at 135.565 kb on + strand, within H281DRAFT_05716at 135.566 kb on - strand, within H281DRAFT_05716at 135.566 kb on - strand, within H281DRAFT_05716at 135.582 kb on + strand, within H281DRAFT_05716at 135.582 kb on + strand, within H281DRAFT_05716at 135.583 kb on - strand, within H281DRAFT_05716at 135.583 kb on - strand, within H281DRAFT_05716at 135.583 kb on - strand, within H281DRAFT_05716at 135.765 kb on + strand, within H281DRAFT_05716at 135.766 kb on - strand, within H281DRAFT_05716at 135.766 kb on - strand, within H281DRAFT_05716at 135.781 kb on - strand, within H281DRAFT_05716at 135.930 kb on + strand, within H281DRAFT_05716at 135.931 kb on - strand, within H281DRAFT_05716at 135.931 kb on - strand, within H281DRAFT_05716at 136.004 kb on + strand, within H281DRAFT_05716at 136.005 kb on - strand, within H281DRAFT_05716at 136.005 kb on - strand, within H281DRAFT_05716at 136.029 kb on + strand, within H281DRAFT_05716

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Per-strain Table

Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 1x
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132,716 + H281DRAFT_05713 0.73 -1.6
132,716 + H281DRAFT_05713 0.73 -3.0
132,716 + H281DRAFT_05713 0.73 -3.2
132,726 - H281DRAFT_05713 0.74 -2.0
132,867 - H281DRAFT_05713 0.87 -3.2
133,138 + H281DRAFT_05714 0.21 -1.8
133,139 - H281DRAFT_05714 0.21 -2.2
133,525 - H281DRAFT_05714 0.86 -3.5
133,557 + -1.4
133,557 + -3.0
133,572 + -3.3
133,572 + -2.5
133,572 + -3.1
133,572 + -4.5
133,573 - -3.8
133,573 - -2.6
133,573 - -2.3
133,587 + +3.4
133,587 + -2.9
133,588 - -1.3
133,753 + -2.7
133,753 + -0.8
133,753 + -2.3
133,753 + -3.8
133,753 + -2.2
133,754 - -1.2
133,754 - -2.0
133,826 - H281DRAFT_05715 0.14 -0.2
133,952 + H281DRAFT_05715 0.22 -3.7
134,213 + H281DRAFT_05715 0.39 -3.0
134,213 + H281DRAFT_05715 0.39 -0.9
134,290 + H281DRAFT_05715 0.45 -2.4
134,290 + H281DRAFT_05715 0.45 -0.4
134,293 + H281DRAFT_05715 0.45 -5.1
134,293 + H281DRAFT_05715 0.45 -2.9
134,294 - H281DRAFT_05715 0.45 -2.4
134,294 - H281DRAFT_05715 0.45 -2.1
134,296 + H281DRAFT_05715 0.45 -2.5
134,296 + H281DRAFT_05715 0.45 -3.7
134,296 + H281DRAFT_05715 0.45 -3.4
134,296 + H281DRAFT_05715 0.45 -1.6
134,296 + H281DRAFT_05715 0.45 -2.9
134,296 + +2.4
134,297 - H281DRAFT_05715 0.45 -2.2
134,297 - H281DRAFT_05715 0.45 -1.4
134,297 - H281DRAFT_05715 0.45 +0.1
134,297 - H281DRAFT_05715 0.45 -4.4
134,297 - H281DRAFT_05715 0.45 -4.3
134,297 - H281DRAFT_05715 0.45 -1.0
134,297 - H281DRAFT_05715 0.45 -1.1
134,297 - H281DRAFT_05715 0.45 -0.9
134,297 - H281DRAFT_05715 0.45 -3.5
134,302 + H281DRAFT_05715 0.45 -4.0
134,302 + H281DRAFT_05715 0.45 -4.1
134,302 + H281DRAFT_05715 0.45 -2.5
134,303 - H281DRAFT_05715 0.46 -2.2
134,303 - H281DRAFT_05715 0.46 -3.9
134,335 + H281DRAFT_05715 0.48 +1.4
134,416 + H281DRAFT_05715 0.53 -1.8
134,416 + H281DRAFT_05715 0.53 -0.3
134,417 - H281DRAFT_05715 0.53 -3.3
134,446 + H281DRAFT_05715 0.55 -2.6
134,446 + H281DRAFT_05715 0.55 -2.9
134,447 - H281DRAFT_05715 0.55 -1.4
134,471 - H281DRAFT_05715 0.57 -2.4
134,471 - H281DRAFT_05715 0.57 -1.0
134,471 - H281DRAFT_05715 0.57 -2.9
134,471 - H281DRAFT_05715 0.57 -1.9
134,566 + H281DRAFT_05715 0.63 -1.4
134,567 - H281DRAFT_05715 0.63 -1.8
134,593 + H281DRAFT_05715 0.65 +1.4
134,594 - H281DRAFT_05715 0.65 -3.5
134,605 + +1.4
134,620 - H281DRAFT_05715 0.67 -2.9
134,620 - H281DRAFT_05715 0.67 -1.6
134,696 + H281DRAFT_05715 0.72 -2.3
134,697 - H281DRAFT_05715 0.72 -1.7
134,719 + H281DRAFT_05715 0.73 -0.9
134,720 - H281DRAFT_05715 0.73 -2.5
134,720 - H281DRAFT_05715 0.73 -2.7
134,720 - H281DRAFT_05715 0.73 -3.6
134,743 + H281DRAFT_05715 0.75 -2.5
134,744 - H281DRAFT_05715 0.75 -3.1
134,869 - H281DRAFT_05715 0.83 -1.6
135,016 + -1.8
135,017 - -0.8
135,068 + -1.9
135,068 + -2.7
135,129 + +0.8
135,129 + -1.5
135,129 + -0.8
135,129 + -1.8
135,133 + -1.6
135,133 + -1.9
135,133 + -2.3
135,133 + -0.6
135,133 + -3.6
135,134 - +0.3
135,134 - -0.5
135,134 - +0.9
135,268 - +0.4
135,268 - +0.6
135,278 + -0.4
135,279 - -0.7
135,279 - +0.6
135,345 + -1.5
135,378 - +0.4
135,436 - -0.8
135,539 + +0.1
135,539 + -1.7
135,539 + -0.9
135,539 + -0.5
135,540 - -0.1
135,540 - -0.2
135,541 + -0.3
135,541 + -0.2
135,541 + -0.1
135,542 - -0.0
135,542 - +2.0
135,542 - -0.1
135,555 - H281DRAFT_05716 0.10 +0.4
135,565 + H281DRAFT_05716 0.12 +1.8
135,565 + H281DRAFT_05716 0.12 -1.6
135,566 - H281DRAFT_05716 0.12 +0.6
135,566 - H281DRAFT_05716 0.12 +0.1
135,582 + H281DRAFT_05716 0.14 +0.7
135,582 + H281DRAFT_05716 0.14 +0.7
135,583 - H281DRAFT_05716 0.14 +0.3
135,583 - H281DRAFT_05716 0.14 +0.5
135,583 - H281DRAFT_05716 0.14 -1.6
135,765 + H281DRAFT_05716 0.39 -0.2
135,766 - H281DRAFT_05716 0.40 -0.6
135,766 - H281DRAFT_05716 0.40 -0.6
135,781 - H281DRAFT_05716 0.42 -0.1
135,930 + H281DRAFT_05716 0.62 +0.5
135,931 - H281DRAFT_05716 0.63 -0.7
135,931 - H281DRAFT_05716 0.63 +0.5
136,004 + H281DRAFT_05716 0.73 -0.1
136,005 - H281DRAFT_05716 0.73 +1.2
136,005 - H281DRAFT_05716 0.73 +0.6
136,029 + H281DRAFT_05716 0.76 +0.4

Or see this region's nucleotide sequence