Experiment: Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 1x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_05085 and H281DRAFT_05086 overlap by 4 nucleotides H281DRAFT_05086 and H281DRAFT_05087 overlap by 4 nucleotides
H281DRAFT_05085: H281DRAFT_05085 - DNA helicase/exodeoxyribonuclease V, gamma subunit, at 23,607 to 26,984
_05085
H281DRAFT_05086: H281DRAFT_05086 - DNA helicase/exodeoxyribonuclease V, beta subunit, at 26,981 to 30,682
_05086
H281DRAFT_05087: H281DRAFT_05087 - exodeoxyribonuclease V alpha subunit, at 30,679 to 33,003
_05087
Position (kb) 26
27
28
29
30
31 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 26.245 kb on + strand, within H281DRAFT_05085 at 26.586 kb on - strand, within H281DRAFT_05085 at 27.030 kb on + strand at 27.056 kb on - strand at 27.111 kb on - strand at 28.295 kb on - strand, within H281DRAFT_05086 at 28.299 kb on - strand, within H281DRAFT_05086 at 28.332 kb on - strand at 29.245 kb on + strand at 29.354 kb on + strand, within H281DRAFT_05086 at 29.519 kb on + strand, within H281DRAFT_05086 at 30.476 kb on + strand at 31.261 kb on - strand, within H281DRAFT_05087 at 31.423 kb on - strand, within H281DRAFT_05087 at 31.647 kb on + strand, within H281DRAFT_05087
Per-strain Table
Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 1x remove 26,245 + H281DRAFT_05085 0.78 -2.7 26,586 - H281DRAFT_05085 0.88 -2.3 27,030 + -0.2 27,056 - -0.6 27,111 - -1.2 28,295 - H281DRAFT_05086 0.35 -1.7 28,299 - H281DRAFT_05086 0.36 -4.0 28,332 - +0.7 29,245 + +0.7 29,354 + H281DRAFT_05086 0.64 -1.3 29,519 + H281DRAFT_05086 0.69 -1.0 30,476 + -0.7 31,261 - H281DRAFT_05087 0.25 -2.4 31,423 - H281DRAFT_05087 0.32 -2.2 31,647 + H281DRAFT_05087 0.42 -0.0
Or see this region's nucleotide sequence