Experiment: Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 1x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_05084 and H281DRAFT_05085 are separated by 225 nucleotides H281DRAFT_05085 and H281DRAFT_05086 overlap by 4 nucleotides
H281DRAFT_05084: H281DRAFT_05084 - Uncharacterized membrane protein YccC, at 20,886 to 23,381
_05084
H281DRAFT_05085: H281DRAFT_05085 - DNA helicase/exodeoxyribonuclease V, gamma subunit, at 23,607 to 26,984
_05085
H281DRAFT_05086: H281DRAFT_05086 - DNA helicase/exodeoxyribonuclease V, beta subunit, at 26,981 to 30,682
_05086
Position (kb) 23
24
25
26
27 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 22.644 kb on - strand, within H281DRAFT_05084 at 22.784 kb on - strand, within H281DRAFT_05084 at 22.813 kb on + strand, within H281DRAFT_05084 at 22.837 kb on + strand, within H281DRAFT_05084 at 22.921 kb on + strand, within H281DRAFT_05084 at 22.922 kb on - strand, within H281DRAFT_05084 at 22.927 kb on + strand, within H281DRAFT_05084 at 23.192 kb on - strand at 23.210 kb on + strand at 23.332 kb on + strand at 23.338 kb on + strand at 23.347 kb on + strand at 24.019 kb on - strand, within H281DRAFT_05085 at 24.028 kb on - strand, within H281DRAFT_05085 at 24.468 kb on + strand, within H281DRAFT_05085 at 24.531 kb on - strand, within H281DRAFT_05085 at 24.531 kb on - strand, within H281DRAFT_05085 at 26.245 kb on + strand, within H281DRAFT_05085 at 26.586 kb on - strand, within H281DRAFT_05085 at 27.030 kb on + strand at 27.056 kb on - strand at 27.111 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 1x remove 22,644 - H281DRAFT_05084 0.70 -0.6 22,784 - H281DRAFT_05084 0.76 -0.5 22,813 + H281DRAFT_05084 0.77 -0.8 22,837 + H281DRAFT_05084 0.78 +0.8 22,921 + H281DRAFT_05084 0.82 +0.0 22,922 - H281DRAFT_05084 0.82 -1.2 22,927 + H281DRAFT_05084 0.82 +1.3 23,192 - +0.0 23,210 + -0.3 23,332 + -0.4 23,338 + -0.8 23,347 + +0.4 24,019 - H281DRAFT_05085 0.12 -3.2 24,028 - H281DRAFT_05085 0.12 -1.0 24,468 + H281DRAFT_05085 0.25 -0.0 24,531 - H281DRAFT_05085 0.27 -2.5 24,531 - H281DRAFT_05085 0.27 -2.1 26,245 + H281DRAFT_05085 0.78 -2.7 26,586 - H281DRAFT_05085 0.88 -2.3 27,030 + -0.2 27,056 - -0.6 27,111 - -1.2
Or see this region's nucleotide sequence