Experiment: Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 1x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_04551 and H281DRAFT_04552 are separated by 111 nucleotides H281DRAFT_04552 and H281DRAFT_04553 are separated by 112 nucleotides H281DRAFT_04553 and H281DRAFT_04554 are separated by 134 nucleotides H281DRAFT_04554 and H281DRAFT_04555 are separated by 24 nucleotides
H281DRAFT_04551: H281DRAFT_04551 - acetolactate synthase, large subunit, at 282,479 to 284,242
_04551
H281DRAFT_04552: H281DRAFT_04552 - acetolactate synthase, small subunit, at 284,354 to 284,845
_04552
H281DRAFT_04553: H281DRAFT_04553 - ketol-acid reductoisomerase, at 284,958 to 285,974
_04553
H281DRAFT_04554: H281DRAFT_04554 - phosphatidylserine decarboxylase, at 286,109 to 286,747
_04554
H281DRAFT_04555: H281DRAFT_04555 - CDP-diacylglycerol--serine O-phosphatidyltransferase, at 286,772 to 287,641
_04555
Position (kb) 284
285
286 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 284.238 kb on + strand at 284.238 kb on + strand at 284.323 kb on + strand at 284.324 kb on - strand at 284.365 kb on + strand at 284.711 kb on + strand, within H281DRAFT_04552 at 284.711 kb on + strand, within H281DRAFT_04552 at 284.711 kb on + strand, within H281DRAFT_04552 at 284.711 kb on + strand, within H281DRAFT_04552 at 284.914 kb on - strand at 285.223 kb on - strand, within H281DRAFT_04553 at 285.375 kb on + strand, within H281DRAFT_04553 at 285.375 kb on + strand, within H281DRAFT_04553 at 285.376 kb on - strand, within H281DRAFT_04553 at 285.376 kb on - strand, within H281DRAFT_04553 at 285.672 kb on + strand, within H281DRAFT_04553 at 285.672 kb on + strand, within H281DRAFT_04553 at 285.673 kb on - strand, within H281DRAFT_04553 at 285.673 kb on - strand, within H281DRAFT_04553 at 285.732 kb on + strand at 285.972 kb on + strand at 285.972 kb on + strand at 285.972 kb on + strand at 285.973 kb on - strand at 285.973 kb on - strand at 285.973 kb on - strand at 286.087 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 1x remove 284,238 + -0.2 284,238 + -0.3 284,323 + +0.6 284,324 - +0.5 284,365 + -2.5 284,711 + H281DRAFT_04552 0.73 -1.3 284,711 + H281DRAFT_04552 0.73 -1.3 284,711 + H281DRAFT_04552 0.73 -1.4 284,711 + H281DRAFT_04552 0.73 -0.7 284,914 - -1.7 285,223 - H281DRAFT_04553 0.26 -3.2 285,375 + H281DRAFT_04553 0.41 -2.3 285,375 + H281DRAFT_04553 0.41 -3.7 285,376 - H281DRAFT_04553 0.41 -2.0 285,376 - H281DRAFT_04553 0.41 -2.3 285,672 + H281DRAFT_04553 0.70 -3.4 285,672 + H281DRAFT_04553 0.70 -3.7 285,673 - H281DRAFT_04553 0.70 -1.8 285,673 - H281DRAFT_04553 0.70 -2.2 285,732 + +1.0 285,972 + -0.9 285,972 + -0.1 285,972 + +0.2 285,973 - +0.1 285,973 - -0.8 285,973 - +2.0 286,087 + -2.0
Or see this region's nucleotide sequence