Experiment: Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 1x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_03862 and H281DRAFT_03863 are separated by 809 nucleotides H281DRAFT_03863 and H281DRAFT_03864 are separated by 144 nucleotides H281DRAFT_03864 and H281DRAFT_03865 are separated by 3 nucleotides
H281DRAFT_03862: H281DRAFT_03862 - Threonine/homoserine/homoserine lactone efflux protein, at 390,950 to 391,639
_03862
H281DRAFT_03863: H281DRAFT_03863 - D-alanyl-D-alanine carboxypeptidase, at 392,449 to 393,111
_03863
H281DRAFT_03864: H281DRAFT_03864 - protocatechuate 3,4-dioxygenase, alpha subunit, at 393,256 to 393,843
_03864
H281DRAFT_03865: H281DRAFT_03865 - protocatechuate 3,4-dioxygenase, beta subunit, at 393,847 to 394,551
_03865
Position (kb) 392
393
394 Strain fitness (log2 ratio) -1
0
1
2
3
4 at 391.539 kb on - strand, within H281DRAFT_03862 at 391.609 kb on - strand at 391.609 kb on - strand at 391.634 kb on + strand at 391.634 kb on + strand at 391.669 kb on - strand at 391.679 kb on + strand at 391.680 kb on - strand at 391.752 kb on + strand at 391.752 kb on + strand at 391.753 kb on - strand at 391.753 kb on - strand at 391.804 kb on - strand at 391.844 kb on + strand at 391.845 kb on - strand at 391.941 kb on + strand at 391.942 kb on - strand at 391.975 kb on + strand at 391.978 kb on - strand at 391.978 kb on - strand at 391.986 kb on - strand at 392.283 kb on - strand at 392.375 kb on + strand at 392.900 kb on - strand, within H281DRAFT_03863 at 393.259 kb on + strand at 393.260 kb on - strand at 393.260 kb on - strand at 393.260 kb on - strand at 393.295 kb on - strand at 393.296 kb on + strand at 393.296 kb on + strand at 393.296 kb on + strand at 393.297 kb on - strand at 393.311 kb on + strand at 393.423 kb on - strand at 393.423 kb on - strand, within H281DRAFT_03864 at 393.475 kb on + strand, within H281DRAFT_03864 at 393.702 kb on + strand, within H281DRAFT_03864 at 393.703 kb on - strand, within H281DRAFT_03864 at 393.771 kb on - strand, within H281DRAFT_03864 at 393.849 kb on - strand at 394.022 kb on + strand, within H281DRAFT_03865 at 394.022 kb on + strand, within H281DRAFT_03865 at 394.023 kb on - strand, within H281DRAFT_03865 at 394.023 kb on - strand, within H281DRAFT_03865
Per-strain Table
Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 1x remove 391,539 - H281DRAFT_03862 0.85 -0.3 391,609 - +0.1 391,609 - -1.6 391,634 + -0.8 391,634 + +3.5 391,669 - +4.0 391,679 + -0.1 391,680 - -0.2 391,752 + -0.3 391,752 + -0.0 391,753 - +0.2 391,753 - +0.1 391,804 - -0.2 391,844 + +0.0 391,845 - +0.9 391,941 + -0.1 391,942 - +0.7 391,975 + +0.2 391,978 - -0.1 391,978 - -0.3 391,986 - -0.1 392,283 - +0.0 392,375 + +0.6 392,900 - H281DRAFT_03863 0.68 -1.0 393,259 + +0.5 393,260 - +0.3 393,260 - +0.0 393,260 - -0.1 393,295 - +3.2 393,296 + +0.1 393,296 + +0.5 393,296 + -0.4 393,297 - -0.4 393,311 + -1.3 393,423 - +0.2 393,423 - H281DRAFT_03864 0.28 +0.2 393,475 + H281DRAFT_03864 0.37 +0.3 393,702 + H281DRAFT_03864 0.76 +1.7 393,703 - H281DRAFT_03864 0.76 +0.3 393,771 - H281DRAFT_03864 0.88 -0.7 393,849 - -0.1 394,022 + H281DRAFT_03865 0.25 -0.8 394,022 + H281DRAFT_03865 0.25 +0.4 394,023 - H281DRAFT_03865 0.25 +0.6 394,023 - H281DRAFT_03865 0.25 +0.5
Or see this region's nucleotide sequence