Experiment: Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 1x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_03795 and H281DRAFT_03796 are separated by 305 nucleotides H281DRAFT_03796 and H281DRAFT_03797 are separated by 198 nucleotides H281DRAFT_03797 and H281DRAFT_03798 are separated by 296 nucleotides
H281DRAFT_03795: H281DRAFT_03795 - hypothetical protein, at 316,240 to 316,488
_03795
H281DRAFT_03796: H281DRAFT_03796 - protein of unknown function (DUF4148), at 316,794 to 317,111
_03796
H281DRAFT_03797: H281DRAFT_03797 - phospholipase C, at 317,310 to 318,830
_03797
H281DRAFT_03798: H281DRAFT_03798 - NitT/TauT family transport system permease protein, at 319,127 to 319,990
_03798
Position (kb) 317
318
319 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 316.602 kb on - strand at 316.658 kb on + strand at 316.659 kb on - strand at 316.738 kb on + strand at 316.738 kb on + strand at 316.795 kb on + strand at 316.796 kb on - strand at 316.796 kb on - strand at 316.807 kb on + strand at 316.877 kb on - strand, within H281DRAFT_03796 at 316.877 kb on - strand, within H281DRAFT_03796 at 316.955 kb on - strand, within H281DRAFT_03796 at 317.119 kb on + strand at 317.139 kb on - strand at 317.405 kb on - strand at 317.405 kb on - strand at 317.417 kb on + strand at 317.543 kb on + strand, within H281DRAFT_03797 at 317.636 kb on + strand, within H281DRAFT_03797 at 318.001 kb on + strand, within H281DRAFT_03797 at 318.088 kb on - strand, within H281DRAFT_03797 at 318.094 kb on - strand, within H281DRAFT_03797 at 318.151 kb on + strand, within H281DRAFT_03797 at 318.224 kb on - strand, within H281DRAFT_03797 at 318.296 kb on + strand, within H281DRAFT_03797 at 318.466 kb on + strand, within H281DRAFT_03797 at 318.984 kb on + strand at 318.985 kb on - strand at 319.443 kb on + strand, within H281DRAFT_03798
Per-strain Table
Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 1x remove 316,602 - +0.8 316,658 + +0.5 316,659 - +0.2 316,738 + +1.0 316,738 + -0.8 316,795 + +1.6 316,796 - -0.0 316,796 - -3.3 316,807 + +0.3 316,877 - H281DRAFT_03796 0.26 -0.2 316,877 - H281DRAFT_03796 0.26 +0.5 316,955 - H281DRAFT_03796 0.51 +0.7 317,119 + -0.1 317,139 - +1.2 317,405 - -0.9 317,405 - +0.5 317,417 + +1.2 317,543 + H281DRAFT_03797 0.15 -0.3 317,636 + H281DRAFT_03797 0.21 +1.2 318,001 + H281DRAFT_03797 0.45 +1.0 318,088 - H281DRAFT_03797 0.51 -1.6 318,094 - H281DRAFT_03797 0.52 +1.1 318,151 + H281DRAFT_03797 0.55 -1.1 318,224 - H281DRAFT_03797 0.60 +0.5 318,296 + H281DRAFT_03797 0.65 +0.3 318,466 + H281DRAFT_03797 0.76 -0.4 318,984 + -0.6 318,985 - -1.9 319,443 + H281DRAFT_03798 0.37 -0.1
Or see this region's nucleotide sequence