Experiment: Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 1x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_03793 and H281DRAFT_03794 are separated by 85 nucleotides H281DRAFT_03794 and H281DRAFT_03795 are separated by 115 nucleotides H281DRAFT_03795 and H281DRAFT_03796 are separated by 305 nucleotides
H281DRAFT_03793: H281DRAFT_03793 - farnesyl-diphosphate farnesyltransferase (EC 2.5.1.21), at 313,820 to 314,866
_03793
H281DRAFT_03794: H281DRAFT_03794 - Peptidoglycan/LPS O-acetylase OafA/YrhL, contains acyltransferase and SGNH-hydrolase domains, at 314,952 to 316,124
_03794
H281DRAFT_03795: H281DRAFT_03795 - hypothetical protein, at 316,240 to 316,488
_03795
H281DRAFT_03796: H281DRAFT_03796 - protein of unknown function (DUF4148), at 316,794 to 317,111
_03796
Position (kb) 314
315
316
317 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 314.914 kb on + strand at 314.915 kb on - strand at 315.216 kb on + strand, within H281DRAFT_03794 at 315.433 kb on - strand, within H281DRAFT_03794 at 315.433 kb on - strand, within H281DRAFT_03794 at 315.433 kb on - strand, within H281DRAFT_03794 at 315.481 kb on - strand, within H281DRAFT_03794 at 315.481 kb on - strand, within H281DRAFT_03794 at 315.485 kb on - strand, within H281DRAFT_03794 at 315.622 kb on + strand at 315.635 kb on - strand, within H281DRAFT_03794 at 315.683 kb on + strand, within H281DRAFT_03794 at 315.691 kb on + strand, within H281DRAFT_03794 at 315.726 kb on - strand, within H281DRAFT_03794 at 315.864 kb on + strand, within H281DRAFT_03794 at 315.864 kb on + strand, within H281DRAFT_03794 at 315.893 kb on + strand, within H281DRAFT_03794 at 315.984 kb on + strand, within H281DRAFT_03794 at 315.985 kb on - strand, within H281DRAFT_03794 at 316.005 kb on + strand, within H281DRAFT_03794 at 316.005 kb on + strand, within H281DRAFT_03794 at 316.070 kb on + strand at 316.071 kb on - strand at 316.213 kb on + strand at 316.213 kb on + strand at 316.286 kb on + strand, within H281DRAFT_03795 at 316.287 kb on - strand, within H281DRAFT_03795 at 316.602 kb on - strand at 316.658 kb on + strand at 316.659 kb on - strand at 316.738 kb on + strand at 316.738 kb on + strand at 316.795 kb on + strand at 316.796 kb on - strand at 316.796 kb on - strand at 316.807 kb on + strand at 316.877 kb on - strand, within H281DRAFT_03796 at 316.877 kb on - strand, within H281DRAFT_03796 at 316.955 kb on - strand, within H281DRAFT_03796 at 317.119 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 1x remove 314,914 + -0.0 314,915 - +0.0 315,216 + H281DRAFT_03794 0.23 +1.3 315,433 - H281DRAFT_03794 0.41 +0.5 315,433 - H281DRAFT_03794 0.41 +1.4 315,433 - H281DRAFT_03794 0.41 -0.1 315,481 - H281DRAFT_03794 0.45 -0.8 315,481 - H281DRAFT_03794 0.45 +0.3 315,485 - H281DRAFT_03794 0.45 +0.7 315,622 + +1.2 315,635 - H281DRAFT_03794 0.58 +0.5 315,683 + H281DRAFT_03794 0.62 -0.3 315,691 + H281DRAFT_03794 0.63 +0.3 315,726 - H281DRAFT_03794 0.66 +0.2 315,864 + H281DRAFT_03794 0.78 -0.6 315,864 + H281DRAFT_03794 0.78 +0.3 315,893 + H281DRAFT_03794 0.80 -0.2 315,984 + H281DRAFT_03794 0.88 +0.2 315,985 - H281DRAFT_03794 0.88 +0.1 316,005 + H281DRAFT_03794 0.90 +0.1 316,005 + H281DRAFT_03794 0.90 +1.8 316,070 + +0.1 316,071 - +0.1 316,213 + -0.1 316,213 + +0.6 316,286 + H281DRAFT_03795 0.18 -0.2 316,287 - H281DRAFT_03795 0.19 -0.3 316,602 - +0.8 316,658 + +0.5 316,659 - +0.2 316,738 + +1.0 316,738 + -0.8 316,795 + +1.6 316,796 - -0.0 316,796 - -3.3 316,807 + +0.3 316,877 - H281DRAFT_03796 0.26 -0.2 316,877 - H281DRAFT_03796 0.26 +0.5 316,955 - H281DRAFT_03796 0.51 +0.7 317,119 + -0.1
Or see this region's nucleotide sequence