Experiment: Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 1x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_03725 and H281DRAFT_03726 are separated by 129 nucleotides H281DRAFT_03726 and H281DRAFT_03727 are separated by 8 nucleotides H281DRAFT_03727 and H281DRAFT_03728 are separated by 33 nucleotides H281DRAFT_03728 and H281DRAFT_03729 are separated by 98 nucleotides
H281DRAFT_03725: H281DRAFT_03725 - hypothetical protein, at 239,662 to 240,882
_03725
H281DRAFT_03726: H281DRAFT_03726 - Predicted dithiol-disulfide oxidoreductase, DUF899 family, at 241,012 to 241,779
_03726
H281DRAFT_03727: H281DRAFT_03727 - Predicted metal-binding membrane protein, at 241,788 to 242,633
_03727
H281DRAFT_03728: H281DRAFT_03728 - Uncharacterized conserved protein, DUF1697 family, at 242,667 to 243,176
_03728
H281DRAFT_03729: H281DRAFT_03729 - carbohydrate ABC transporter substrate-binding protein, CUT1 family, at 243,275 to 245,014
_03729
Position (kb) 241
242
243 Strain fitness (log2 ratio) -1
0
1
2
3 at 240.936 kb on + strand at 240.936 kb on + strand at 240.960 kb on + strand at 241.382 kb on - strand, within H281DRAFT_03726 at 241.462 kb on - strand, within H281DRAFT_03726 at 241.655 kb on - strand, within H281DRAFT_03726 at 241.655 kb on - strand, within H281DRAFT_03726 at 241.663 kb on + strand, within H281DRAFT_03726 at 241.664 kb on - strand, within H281DRAFT_03726 at 241.697 kb on - strand, within H281DRAFT_03726 at 242.147 kb on + strand, within H281DRAFT_03727 at 242.412 kb on + strand, within H281DRAFT_03727 at 242.413 kb on - strand, within H281DRAFT_03727 at 242.425 kb on + strand, within H281DRAFT_03727 at 242.526 kb on - strand, within H281DRAFT_03727 at 243.070 kb on - strand, within H281DRAFT_03728 at 243.318 kb on + strand at 243.567 kb on + strand, within H281DRAFT_03729 at 243.621 kb on + strand, within H281DRAFT_03729 at 243.622 kb on - strand, within H281DRAFT_03729
Per-strain Table
Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 1x remove 240,936 + -0.2 240,936 + -1.4 240,960 + -0.6 241,382 - H281DRAFT_03726 0.48 -0.4 241,462 - H281DRAFT_03726 0.59 +0.8 241,655 - H281DRAFT_03726 0.84 +0.2 241,655 - H281DRAFT_03726 0.84 +1.2 241,663 + H281DRAFT_03726 0.85 +0.2 241,664 - H281DRAFT_03726 0.85 +0.1 241,697 - H281DRAFT_03726 0.89 +1.6 242,147 + H281DRAFT_03727 0.42 -0.4 242,412 + H281DRAFT_03727 0.74 +0.2 242,413 - H281DRAFT_03727 0.74 +0.9 242,425 + H281DRAFT_03727 0.75 -0.5 242,526 - H281DRAFT_03727 0.87 -0.1 243,070 - H281DRAFT_03728 0.79 +1.1 243,318 + -0.0 243,567 + H281DRAFT_03729 0.17 +0.1 243,621 + H281DRAFT_03729 0.20 -0.2 243,622 - H281DRAFT_03729 0.20 +2.8
Or see this region's nucleotide sequence