Experiment: Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 1x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_03135 and H281DRAFT_03136 are separated by 10 nucleotides H281DRAFT_03136 and H281DRAFT_03137 are separated by 283 nucleotides
H281DRAFT_03135: H281DRAFT_03135 - Uncharacterized conserved protein, Alpha-E superfamily, at 171,526 to 172,476
_03135
H281DRAFT_03136: H281DRAFT_03136 - Transglutaminase-like enzyme, putative cysteine protease, at 172,487 to 173,287
_03136
H281DRAFT_03137: H281DRAFT_03137 - putative proteasome-type protease, at 173,571 to 174,443
_03137
Position (kb) 172
173
174 Strain fitness (log2 ratio) -2
-1
0
1
2 at 171.512 kb on + strand at 171.531 kb on - strand at 171.568 kb on + strand at 171.569 kb on - strand at 171.569 kb on - strand at 171.864 kb on + strand, within H281DRAFT_03135 at 171.864 kb on + strand, within H281DRAFT_03135 at 171.865 kb on - strand, within H281DRAFT_03135 at 171.865 kb on - strand, within H281DRAFT_03135 at 171.865 kb on - strand, within H281DRAFT_03135 at 172.124 kb on - strand, within H281DRAFT_03135 at 172.127 kb on - strand, within H281DRAFT_03135 at 172.454 kb on - strand at 172.454 kb on - strand at 172.486 kb on + strand at 172.486 kb on + strand at 172.486 kb on + strand at 172.487 kb on - strand at 172.487 kb on - strand at 172.487 kb on - strand at 172.487 kb on - strand at 172.646 kb on + strand, within H281DRAFT_03136 at 172.663 kb on + strand, within H281DRAFT_03136 at 172.664 kb on - strand, within H281DRAFT_03136 at 172.688 kb on - strand, within H281DRAFT_03136 at 172.910 kb on + strand, within H281DRAFT_03136 at 172.911 kb on - strand, within H281DRAFT_03136 at 173.048 kb on + strand, within H281DRAFT_03136 at 173.049 kb on - strand, within H281DRAFT_03136 at 173.192 kb on + strand, within H281DRAFT_03136 at 173.325 kb on + strand at 173.528 kb on + strand at 173.529 kb on - strand at 173.570 kb on + strand at 173.571 kb on - strand at 173.577 kb on + strand at 173.577 kb on + strand at 173.577 kb on + strand at 173.578 kb on - strand at 173.584 kb on + strand at 173.585 kb on - strand at 173.585 kb on - strand at 173.958 kb on + strand, within H281DRAFT_03137 at 173.959 kb on - strand, within H281DRAFT_03137 at 174.159 kb on + strand, within H281DRAFT_03137 at 174.217 kb on - strand, within H281DRAFT_03137 at 174.217 kb on - strand, within H281DRAFT_03137
Per-strain Table
Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 1x remove 171,512 + -0.1 171,531 - -0.1 171,568 + -0.7 171,569 - +0.8 171,569 - -0.4 171,864 + H281DRAFT_03135 0.36 +0.9 171,864 + H281DRAFT_03135 0.36 +0.5 171,865 - H281DRAFT_03135 0.36 -0.6 171,865 - H281DRAFT_03135 0.36 +0.2 171,865 - H281DRAFT_03135 0.36 +0.3 172,124 - H281DRAFT_03135 0.63 +1.2 172,127 - H281DRAFT_03135 0.63 -0.2 172,454 - -0.6 172,454 - -0.0 172,486 + -0.4 172,486 + +2.0 172,486 + -0.7 172,487 - +0.4 172,487 - -0.7 172,487 - +0.3 172,487 - -0.1 172,646 + H281DRAFT_03136 0.20 +0.3 172,663 + H281DRAFT_03136 0.22 +0.5 172,664 - H281DRAFT_03136 0.22 -0.0 172,688 - H281DRAFT_03136 0.25 -1.4 172,910 + H281DRAFT_03136 0.53 -0.1 172,911 - H281DRAFT_03136 0.53 -0.5 173,048 + H281DRAFT_03136 0.70 -1.6 173,049 - H281DRAFT_03136 0.70 -0.1 173,192 + H281DRAFT_03136 0.88 -0.3 173,325 + -0.0 173,528 + -1.1 173,529 - +1.6 173,570 + +1.0 173,571 - +0.5 173,577 + -0.2 173,577 + +0.3 173,577 + -0.9 173,578 - -0.7 173,584 + -0.7 173,585 - -0.7 173,585 - -0.2 173,958 + H281DRAFT_03137 0.44 +0.2 173,959 - H281DRAFT_03137 0.44 -0.4 174,159 + H281DRAFT_03137 0.67 -0.6 174,217 - H281DRAFT_03137 0.74 -1.9 174,217 - H281DRAFT_03137 0.74 +0.5
Or see this region's nucleotide sequence