Experiment: Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 1x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_03069 and H281DRAFT_03070 overlap by 4 nucleotides H281DRAFT_03070 and H281DRAFT_03071 are separated by 7 nucleotides H281DRAFT_03071 and H281DRAFT_03072 overlap by 4 nucleotides H281DRAFT_03072 and H281DRAFT_03073 are separated by 107 nucleotides
H281DRAFT_03069: H281DRAFT_03069 - Uncharacterized conserved protein, at 100,180 to 100,551
_03069
H281DRAFT_03070: H281DRAFT_03070 - hypothetical protein, at 100,548 to 100,670
_03070
H281DRAFT_03071: H281DRAFT_03071 - two-component system, OmpR family, response regulator, at 100,678 to 101,418
_03071
H281DRAFT_03072: H281DRAFT_03072 - Signal transduction histidine kinase, at 101,415 to 102,758
_03072
H281DRAFT_03073: H281DRAFT_03073 - sulfane dehydrogenase subunit SoxC, at 102,866 to 104,143
_03073
Position (kb) 101
102
103 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 100.697 kb on + strand at 100.698 kb on - strand at 100.956 kb on - strand, within H281DRAFT_03071 at 101.348 kb on - strand at 101.424 kb on - strand at 101.858 kb on + strand, within H281DRAFT_03072 at 101.858 kb on + strand, within H281DRAFT_03072 at 101.859 kb on - strand, within H281DRAFT_03072 at 102.096 kb on + strand, within H281DRAFT_03072 at 102.096 kb on + strand, within H281DRAFT_03072 at 102.097 kb on - strand, within H281DRAFT_03072 at 102.319 kb on + strand, within H281DRAFT_03072 at 102.320 kb on - strand, within H281DRAFT_03072 at 102.342 kb on + strand, within H281DRAFT_03072 at 102.680 kb on + strand at 103.047 kb on - strand, within H281DRAFT_03073 at 103.371 kb on + strand at 103.372 kb on - strand, within H281DRAFT_03073 at 103.646 kb on - strand at 103.654 kb on + strand, within H281DRAFT_03073 at 103.655 kb on - strand, within H281DRAFT_03073
Per-strain Table
Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 1x remove 100,697 + +0.1 100,698 - +0.2 100,956 - H281DRAFT_03071 0.38 +0.0 101,348 - -0.3 101,424 - +1.0 101,858 + H281DRAFT_03072 0.33 -2.8 101,858 + H281DRAFT_03072 0.33 -0.9 101,859 - H281DRAFT_03072 0.33 -2.5 102,096 + H281DRAFT_03072 0.51 -2.0 102,096 + H281DRAFT_03072 0.51 +1.0 102,097 - H281DRAFT_03072 0.51 -1.5 102,319 + H281DRAFT_03072 0.67 +0.1 102,320 - H281DRAFT_03072 0.67 -1.4 102,342 + H281DRAFT_03072 0.69 -1.4 102,680 + -0.6 103,047 - H281DRAFT_03073 0.14 -0.2 103,371 + +2.3 103,372 - H281DRAFT_03073 0.40 -0.0 103,646 - -0.6 103,654 + H281DRAFT_03073 0.62 +0.2 103,655 - H281DRAFT_03073 0.62 -0.0
Or see this region's nucleotide sequence