Experiment: Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 1x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_02867 and H281DRAFT_02868 overlap by 4 nucleotides H281DRAFT_02868 and H281DRAFT_02869 are separated by 39 nucleotides
H281DRAFT_02867: H281DRAFT_02867 - DNA repair exonuclease SbcCD ATPase subunit, at 460,841 to 463,465
_02867
H281DRAFT_02868: H281DRAFT_02868 - DNA repair exonuclease SbcCD nuclease subunit, at 463,462 to 464,604
_02868
H281DRAFT_02869: H281DRAFT_02869 - Uncharacterized membrane-anchored protein YjiN, DUF445 family, at 464,644 to 466,140
_02869
Position (kb) 463
464
465 Strain fitness (log2 ratio) -1
0
1
2 at 462.493 kb on - strand, within H281DRAFT_02867 at 462.990 kb on + strand, within H281DRAFT_02867 at 462.991 kb on - strand, within H281DRAFT_02867 at 463.308 kb on + strand at 463.322 kb on + strand at 464.033 kb on + strand, within H281DRAFT_02868 at 464.034 kb on - strand, within H281DRAFT_02868 at 464.194 kb on - strand, within H281DRAFT_02868 at 464.194 kb on - strand, within H281DRAFT_02868 at 464.586 kb on + strand at 464.825 kb on + strand, within H281DRAFT_02869 at 464.977 kb on - strand, within H281DRAFT_02869 at 465.250 kb on + strand, within H281DRAFT_02869 at 465.487 kb on - strand, within H281DRAFT_02869
Per-strain Table
Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 1x remove 462,493 - H281DRAFT_02867 0.63 -0.3 462,990 + H281DRAFT_02867 0.82 -0.4 462,991 - H281DRAFT_02867 0.82 -0.3 463,308 + +0.5 463,322 + +1.9 464,033 + H281DRAFT_02868 0.50 +0.3 464,034 - H281DRAFT_02868 0.50 +0.4 464,194 - H281DRAFT_02868 0.64 +0.7 464,194 - H281DRAFT_02868 0.64 +0.2 464,586 + -0.4 464,825 + H281DRAFT_02869 0.12 +0.2 464,977 - H281DRAFT_02869 0.22 +0.8 465,250 + H281DRAFT_02869 0.40 +0.7 465,487 - H281DRAFT_02869 0.56 +1.8
Or see this region's nucleotide sequence