Experiment: Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 1x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_02855 and H281DRAFT_02856 are separated by 272 nucleotides H281DRAFT_02856 and H281DRAFT_02857 are separated by 212 nucleotides H281DRAFT_02857 and H281DRAFT_02858 are separated by 74 nucleotides H281DRAFT_02858 and H281DRAFT_02859 are separated by 29 nucleotides
H281DRAFT_02855: H281DRAFT_02855 - carbonic anhydrase, at 448,963 to 449,640
_02855
H281DRAFT_02856: H281DRAFT_02856 - Protein of unknown function (DUF1488), at 449,913 to 450,185
_02856
H281DRAFT_02857: H281DRAFT_02857 - drug resistance transporter, EmrB/QacA subfamily, at 450,398 to 451,891
_02857
H281DRAFT_02858: H281DRAFT_02858 - precorrin-4 C11-methyltransferase /precorrin-2 C20-methyltransferase, at 451,966 to 452,691
_02858
H281DRAFT_02859: H281DRAFT_02859 - precorrin-6A reductase (EC 1.3.1.54), at 452,721 to 453,443
_02859
Position (kb) 450
451
452 Strain fitness (log2 ratio) -1
0
1
2 at 449.623 kb on - strand at 449.663 kb on + strand at 449.664 kb on - strand at 449.705 kb on - strand at 449.765 kb on - strand at 449.848 kb on - strand at 449.914 kb on + strand at 449.915 kb on - strand at 449.915 kb on - strand at 450.031 kb on - strand, within H281DRAFT_02856 at 450.185 kb on + strand at 450.186 kb on - strand at 450.293 kb on + strand at 450.536 kb on + strand at 450.536 kb on + strand at 450.537 kb on - strand at 450.537 kb on - strand at 450.538 kb on + strand at 450.538 kb on + strand at 450.539 kb on - strand at 450.539 kb on - strand at 450.546 kb on + strand at 450.547 kb on - strand at 450.611 kb on + strand, within H281DRAFT_02857 at 450.776 kb on + strand, within H281DRAFT_02857 at 450.809 kb on + strand, within H281DRAFT_02857 at 450.810 kb on - strand, within H281DRAFT_02857 at 450.810 kb on - strand, within H281DRAFT_02857 at 450.982 kb on + strand, within H281DRAFT_02857 at 450.983 kb on - strand, within H281DRAFT_02857 at 451.253 kb on + strand, within H281DRAFT_02857 at 451.253 kb on + strand, within H281DRAFT_02857 at 451.254 kb on - strand, within H281DRAFT_02857 at 451.254 kb on - strand, within H281DRAFT_02857 at 451.254 kb on - strand, within H281DRAFT_02857 at 451.254 kb on - strand, within H281DRAFT_02857 at 451.671 kb on + strand, within H281DRAFT_02857 at 451.918 kb on + strand at 451.918 kb on + strand at 451.918 kb on + strand at 451.918 kb on + strand at 451.962 kb on + strand at 451.980 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 1x remove 449,623 - +0.8 449,663 + +0.1 449,664 - +0.2 449,705 - -0.5 449,765 - -0.9 449,848 - +0.3 449,914 + +0.2 449,915 - -0.9 449,915 - +0.0 450,031 - H281DRAFT_02856 0.43 -0.6 450,185 + +0.5 450,186 - +1.1 450,293 + -0.6 450,536 + -0.5 450,536 + -0.8 450,537 - +0.2 450,537 - -0.6 450,538 + +0.9 450,538 + -0.1 450,539 - +0.2 450,539 - -0.2 450,546 + +0.1 450,547 - +1.9 450,611 + H281DRAFT_02857 0.14 -0.2 450,776 + H281DRAFT_02857 0.25 +0.5 450,809 + H281DRAFT_02857 0.28 +0.4 450,810 - H281DRAFT_02857 0.28 +1.6 450,810 - H281DRAFT_02857 0.28 -0.2 450,982 + H281DRAFT_02857 0.39 -0.9 450,983 - H281DRAFT_02857 0.39 +0.2 451,253 + H281DRAFT_02857 0.57 -0.6 451,253 + H281DRAFT_02857 0.57 +0.3 451,254 - H281DRAFT_02857 0.57 -0.5 451,254 - H281DRAFT_02857 0.57 +0.2 451,254 - H281DRAFT_02857 0.57 +0.4 451,254 - H281DRAFT_02857 0.57 +0.4 451,671 + H281DRAFT_02857 0.85 -0.3 451,918 + +0.2 451,918 + +0.2 451,918 + +0.8 451,918 + +0.2 451,962 + -0.3 451,980 - -0.7
Or see this region's nucleotide sequence