Experiment: Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 1x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_02849 and H281DRAFT_02850 are separated by 134 nucleotides H281DRAFT_02850 and H281DRAFT_02851 overlap by 4 nucleotides H281DRAFT_02851 and H281DRAFT_02852 are separated by 94 nucleotides
H281DRAFT_02849: H281DRAFT_02849 - Pimeloyl-ACP methyl ester carboxylesterase, at 442,196 to 443,350
_02849
H281DRAFT_02850: H281DRAFT_02850 - holin-like protein, at 443,485 to 443,856
_02850
H281DRAFT_02851: H281DRAFT_02851 - TIGR00659 family protein, at 443,853 to 444,593
_02851
H281DRAFT_02852: H281DRAFT_02852 - porin, GBP family, at 444,688 to 445,833
_02852
Position (kb) 443
444
445 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 443.060 kb on - strand, within H281DRAFT_02849 at 443.060 kb on - strand, within H281DRAFT_02849 at 443.200 kb on - strand, within H281DRAFT_02849 at 443.434 kb on + strand at 443.445 kb on + strand at 443.483 kb on - strand at 443.511 kb on + strand at 444.340 kb on + strand, within H281DRAFT_02851 at 444.819 kb on - strand, within H281DRAFT_02852 at 444.819 kb on - strand, within H281DRAFT_02852 at 444.872 kb on + strand, within H281DRAFT_02852 at 444.872 kb on + strand, within H281DRAFT_02852 at 444.873 kb on - strand, within H281DRAFT_02852 at 444.914 kb on + strand, within H281DRAFT_02852 at 444.951 kb on - strand, within H281DRAFT_02852 at 445.104 kb on - strand, within H281DRAFT_02852 at 445.247 kb on + strand, within H281DRAFT_02852 at 445.310 kb on + strand, within H281DRAFT_02852 at 445.312 kb on + strand, within H281DRAFT_02852 at 445.431 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 1x remove 443,060 - H281DRAFT_02849 0.75 +0.1 443,060 - H281DRAFT_02849 0.75 -0.0 443,200 - H281DRAFT_02849 0.87 +0.6 443,434 + +0.4 443,445 + +0.1 443,483 - +0.1 443,511 + +1.6 444,340 + H281DRAFT_02851 0.66 -0.5 444,819 - H281DRAFT_02852 0.11 -0.1 444,819 - H281DRAFT_02852 0.11 -2.6 444,872 + H281DRAFT_02852 0.16 -1.1 444,872 + H281DRAFT_02852 0.16 -1.2 444,873 - H281DRAFT_02852 0.16 -0.3 444,914 + H281DRAFT_02852 0.20 -0.2 444,951 - H281DRAFT_02852 0.23 +1.2 445,104 - H281DRAFT_02852 0.36 +0.2 445,247 + H281DRAFT_02852 0.49 -2.7 445,310 + H281DRAFT_02852 0.54 -0.3 445,312 + H281DRAFT_02852 0.54 +0.6 445,431 - +3.9
Or see this region's nucleotide sequence