Experiment: Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 1x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_02817 and H281DRAFT_02818 are separated by 284 nucleotides H281DRAFT_02818 and H281DRAFT_02819 are separated by 220 nucleotides H281DRAFT_02819 and H281DRAFT_02820 overlap by 4 nucleotides
H281DRAFT_02817: H281DRAFT_02817 - hypothetical protein, at 408,220 to 409,086
_02817
H281DRAFT_02818: H281DRAFT_02818 - Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain, at 409,371 to 409,850
_02818
H281DRAFT_02819: H281DRAFT_02819 - DNA ligase-1, at 410,071 to 411,756
_02819
H281DRAFT_02820: H281DRAFT_02820 - putative mRNA 3-end processing factor, at 411,753 to 412,916
_02820
Position (kb) 410
411
412 Strain fitness (log2 ratio) -2
-1
0
1 at 409.089 kb on - strand at 409.530 kb on - strand, within H281DRAFT_02818 at 409.854 kb on + strand at 409.854 kb on + strand at 409.854 kb on + strand at 410.050 kb on - strand at 410.050 kb on - strand at 410.053 kb on + strand at 410.054 kb on - strand at 410.116 kb on - strand at 410.230 kb on + strand at 410.287 kb on + strand, within H281DRAFT_02819 at 410.405 kb on + strand, within H281DRAFT_02819 at 410.406 kb on - strand, within H281DRAFT_02819 at 410.406 kb on - strand, within H281DRAFT_02819 at 410.406 kb on - strand, within H281DRAFT_02819 at 410.522 kb on + strand, within H281DRAFT_02819 at 410.750 kb on + strand, within H281DRAFT_02819 at 410.751 kb on - strand, within H281DRAFT_02819 at 411.252 kb on + strand, within H281DRAFT_02819 at 411.253 kb on - strand, within H281DRAFT_02819 at 411.378 kb on - strand, within H281DRAFT_02819 at 411.677 kb on + strand at 411.734 kb on + strand at 411.867 kb on - strand at 411.878 kb on - strand, within H281DRAFT_02820 at 412.100 kb on + strand, within H281DRAFT_02820 at 412.103 kb on - strand, within H281DRAFT_02820 at 412.103 kb on - strand, within H281DRAFT_02820 at 412.566 kb on + strand, within H281DRAFT_02820 at 412.642 kb on + strand, within H281DRAFT_02820
Per-strain Table
Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 1x remove 409,089 - -2.0 409,530 - H281DRAFT_02818 0.33 +0.1 409,854 + +1.4 409,854 + -0.3 409,854 + +0.2 410,050 - -0.2 410,050 - +0.7 410,053 + -0.2 410,054 - -0.4 410,116 - -0.1 410,230 + -0.4 410,287 + H281DRAFT_02819 0.13 +0.1 410,405 + H281DRAFT_02819 0.20 -0.4 410,406 - H281DRAFT_02819 0.20 -0.4 410,406 - H281DRAFT_02819 0.20 +0.8 410,406 - H281DRAFT_02819 0.20 +0.2 410,522 + H281DRAFT_02819 0.27 +0.8 410,750 + H281DRAFT_02819 0.40 -0.3 410,751 - H281DRAFT_02819 0.40 -0.1 411,252 + H281DRAFT_02819 0.70 -0.2 411,253 - H281DRAFT_02819 0.70 +0.6 411,378 - H281DRAFT_02819 0.78 +0.5 411,677 + -0.4 411,734 + +0.0 411,867 - -1.2 411,878 - H281DRAFT_02820 0.11 +0.4 412,100 + H281DRAFT_02820 0.30 +0.8 412,103 - H281DRAFT_02820 0.30 -0.8 412,103 - H281DRAFT_02820 0.30 -0.3 412,566 + H281DRAFT_02820 0.70 -0.7 412,642 + H281DRAFT_02820 0.76 -0.6
Or see this region's nucleotide sequence