Experiment: Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 1x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_02805 and H281DRAFT_02806 are separated by 87 nucleotides H281DRAFT_02806 and H281DRAFT_02807 are separated by 116 nucleotides H281DRAFT_02807 and H281DRAFT_02808 are separated by 249 nucleotides
H281DRAFT_02805: H281DRAFT_02805 - fructose-bisphosphate aldolase, at 392,865 to 393,884
_02805
H281DRAFT_02806: H281DRAFT_02806 - hypothetical protein, at 393,972 to 394,265
_02806
H281DRAFT_02807: H281DRAFT_02807 - Signal transduction histidine kinase, at 394,382 to 396,568
_02807
H281DRAFT_02808: H281DRAFT_02808 - NAD(P)H-nitrite reductase, at 396,818 to 398,428
_02808
Position (kb) 394
395
396
397 Strain fitness (log2 ratio) -1
0
1
2 at 393.512 kb on + strand, within H281DRAFT_02805 at 393.512 kb on + strand, within H281DRAFT_02805 at 393.512 kb on + strand, within H281DRAFT_02805 at 393.512 kb on + strand, within H281DRAFT_02805 at 393.513 kb on - strand, within H281DRAFT_02805 at 393.513 kb on - strand, within H281DRAFT_02805 at 393.588 kb on + strand, within H281DRAFT_02805 at 393.588 kb on + strand, within H281DRAFT_02805 at 393.735 kb on + strand, within H281DRAFT_02805 at 393.736 kb on - strand, within H281DRAFT_02805 at 393.763 kb on + strand, within H281DRAFT_02805 at 393.763 kb on + strand, within H281DRAFT_02805 at 393.882 kb on + strand at 394.101 kb on - strand, within H281DRAFT_02806 at 394.241 kb on + strand at 394.439 kb on + strand at 394.440 kb on - strand at 394.440 kb on - strand at 394.809 kb on + strand, within H281DRAFT_02807 at 394.810 kb on - strand, within H281DRAFT_02807 at 395.011 kb on - strand, within H281DRAFT_02807 at 395.011 kb on - strand, within H281DRAFT_02807 at 395.024 kb on + strand, within H281DRAFT_02807 at 395.417 kb on + strand, within H281DRAFT_02807 at 395.677 kb on - strand, within H281DRAFT_02807 at 395.691 kb on + strand, within H281DRAFT_02807 at 395.692 kb on - strand, within H281DRAFT_02807 at 395.877 kb on + strand, within H281DRAFT_02807 at 395.938 kb on - strand, within H281DRAFT_02807 at 396.004 kb on + strand, within H281DRAFT_02807 at 396.462 kb on - strand at 396.584 kb on + strand at 396.585 kb on - strand at 396.607 kb on + strand at 396.631 kb on + strand at 396.650 kb on + strand at 396.651 kb on - strand at 396.731 kb on + strand at 396.732 kb on - strand at 396.732 kb on - strand at 396.834 kb on + strand at 396.834 kb on + strand at 396.834 kb on + strand at 396.835 kb on - strand at 397.018 kb on + strand, within H281DRAFT_02808 at 397.019 kb on - strand, within H281DRAFT_02808 at 397.232 kb on + strand, within H281DRAFT_02808 at 397.430 kb on - strand, within H281DRAFT_02808 at 397.463 kb on + strand, within H281DRAFT_02808 at 397.464 kb on - strand, within H281DRAFT_02808 at 397.538 kb on + strand, within H281DRAFT_02808
Per-strain Table
Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 1x remove 393,512 + H281DRAFT_02805 0.63 +1.4 393,512 + H281DRAFT_02805 0.63 +0.3 393,512 + H281DRAFT_02805 0.63 +0.1 393,512 + H281DRAFT_02805 0.63 +0.8 393,513 - H281DRAFT_02805 0.64 -1.2 393,513 - H281DRAFT_02805 0.64 +0.6 393,588 + H281DRAFT_02805 0.71 -0.2 393,588 + H281DRAFT_02805 0.71 -0.6 393,735 + H281DRAFT_02805 0.85 +0.3 393,736 - H281DRAFT_02805 0.85 +1.3 393,763 + H281DRAFT_02805 0.88 +0.7 393,763 + H281DRAFT_02805 0.88 +0.7 393,882 + +0.2 394,101 - H281DRAFT_02806 0.44 -0.7 394,241 + -0.0 394,439 + +0.5 394,440 - +0.0 394,440 - -0.2 394,809 + H281DRAFT_02807 0.20 +1.0 394,810 - H281DRAFT_02807 0.20 +1.0 395,011 - H281DRAFT_02807 0.29 -1.0 395,011 - H281DRAFT_02807 0.29 +0.3 395,024 + H281DRAFT_02807 0.29 +0.1 395,417 + H281DRAFT_02807 0.47 +0.1 395,677 - H281DRAFT_02807 0.59 -0.4 395,691 + H281DRAFT_02807 0.60 +1.8 395,692 - H281DRAFT_02807 0.60 +0.8 395,877 + H281DRAFT_02807 0.68 -0.2 395,938 - H281DRAFT_02807 0.71 +1.1 396,004 + H281DRAFT_02807 0.74 -0.2 396,462 - +0.9 396,584 + -0.9 396,585 - +0.2 396,607 + +1.3 396,631 + -0.2 396,650 + -1.4 396,651 - +0.3 396,731 + +1.4 396,732 - +0.4 396,732 - -0.1 396,834 + -0.4 396,834 + +0.4 396,834 + -0.4 396,835 - -0.1 397,018 + H281DRAFT_02808 0.12 +0.2 397,019 - H281DRAFT_02808 0.12 +0.1 397,232 + H281DRAFT_02808 0.26 -0.2 397,430 - H281DRAFT_02808 0.38 +0.0 397,463 + H281DRAFT_02808 0.40 -0.1 397,464 - H281DRAFT_02808 0.40 +0.3 397,538 + H281DRAFT_02808 0.45 +0.9
Or see this region's nucleotide sequence