Experiment: Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 1x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_02516 and H281DRAFT_02517 are separated by 227 nucleotides H281DRAFT_02517 and H281DRAFT_02518 are separated by 121 nucleotides H281DRAFT_02518 and H281DRAFT_02519 are separated by 99 nucleotides
H281DRAFT_02516: H281DRAFT_02516 - Nitrate/nitrite transporter NarK, at 92,198 to 93,571
_02516
H281DRAFT_02517: H281DRAFT_02517 - Acetyltransferase (GNAT) domain-containing protein, at 93,799 to 94,620
_02517
H281DRAFT_02518: H281DRAFT_02518 - Acetyltransferases, at 94,742 to 95,278
_02518
H281DRAFT_02519: H281DRAFT_02519 - hypothetical protein, at 95,378 to 95,767
_02519
Position (kb) 93
94
95 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 92.979 kb on - strand, within H281DRAFT_02516 at 92.980 kb on + strand, within H281DRAFT_02516 at 92.993 kb on + strand, within H281DRAFT_02516 at 92.993 kb on + strand, within H281DRAFT_02516 at 92.993 kb on + strand, within H281DRAFT_02516 at 92.994 kb on - strand, within H281DRAFT_02516 at 92.995 kb on + strand, within H281DRAFT_02516 at 92.995 kb on + strand, within H281DRAFT_02516 at 92.996 kb on - strand, within H281DRAFT_02516 at 92.996 kb on - strand, within H281DRAFT_02516 at 93.002 kb on + strand, within H281DRAFT_02516 at 93.065 kb on - strand, within H281DRAFT_02516 at 93.434 kb on + strand at 93.473 kb on + strand at 93.474 kb on - strand at 93.558 kb on + strand at 93.697 kb on - strand at 93.840 kb on + strand at 93.892 kb on + strand, within H281DRAFT_02517 at 93.893 kb on - strand, within H281DRAFT_02517 at 93.893 kb on - strand, within H281DRAFT_02517 at 93.893 kb on - strand, within H281DRAFT_02517 at 93.895 kb on - strand, within H281DRAFT_02517 at 94.045 kb on - strand, within H281DRAFT_02517 at 94.191 kb on + strand, within H281DRAFT_02517 at 94.260 kb on + strand, within H281DRAFT_02517 at 94.273 kb on + strand, within H281DRAFT_02517 at 94.273 kb on + strand, within H281DRAFT_02517 at 94.273 kb on + strand, within H281DRAFT_02517 at 94.273 kb on + strand, within H281DRAFT_02517 at 94.273 kb on + strand, within H281DRAFT_02517 at 94.273 kb on + strand, within H281DRAFT_02517 at 94.274 kb on - strand, within H281DRAFT_02517 at 94.297 kb on + strand, within H281DRAFT_02517 at 94.298 kb on - strand, within H281DRAFT_02517 at 94.361 kb on + strand, within H281DRAFT_02517 at 94.361 kb on + strand, within H281DRAFT_02517 at 94.361 kb on + strand, within H281DRAFT_02517 at 94.413 kb on + strand, within H281DRAFT_02517 at 94.414 kb on - strand, within H281DRAFT_02517 at 94.416 kb on + strand, within H281DRAFT_02517 at 94.541 kb on + strand at 94.544 kb on - strand at 94.544 kb on - strand at 94.721 kb on + strand at 94.797 kb on + strand, within H281DRAFT_02518 at 94.911 kb on + strand, within H281DRAFT_02518 at 95.113 kb on + strand, within H281DRAFT_02518 at 95.114 kb on - strand, within H281DRAFT_02518 at 95.181 kb on - strand, within H281DRAFT_02518 at 95.270 kb on - strand at 95.365 kb on + strand at 95.393 kb on - strand at 95.438 kb on + strand, within H281DRAFT_02519 at 95.438 kb on + strand, within H281DRAFT_02519 at 95.438 kb on + strand, within H281DRAFT_02519 at 95.438 kb on + strand, within H281DRAFT_02519 at 95.439 kb on - strand, within H281DRAFT_02519 at 95.446 kb on - strand, within H281DRAFT_02519 at 95.528 kb on + strand, within H281DRAFT_02519 at 95.529 kb on - strand, within H281DRAFT_02519 at 95.604 kb on - strand, within H281DRAFT_02519
Per-strain Table
Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 1x remove 92,979 - H281DRAFT_02516 0.57 -0.5 92,980 + H281DRAFT_02516 0.57 +0.2 92,993 + H281DRAFT_02516 0.58 +0.4 92,993 + H281DRAFT_02516 0.58 +0.1 92,993 + H281DRAFT_02516 0.58 +0.8 92,994 - H281DRAFT_02516 0.58 -0.3 92,995 + H281DRAFT_02516 0.58 +1.2 92,995 + H281DRAFT_02516 0.58 +1.2 92,996 - H281DRAFT_02516 0.58 -0.4 92,996 - H281DRAFT_02516 0.58 +0.3 93,002 + H281DRAFT_02516 0.59 -0.4 93,065 - H281DRAFT_02516 0.63 +2.8 93,434 + +0.4 93,473 + +0.7 93,474 - -0.1 93,558 + -0.3 93,697 - -0.2 93,840 + -0.4 93,892 + H281DRAFT_02517 0.11 -0.6 93,893 - H281DRAFT_02517 0.11 +0.3 93,893 - H281DRAFT_02517 0.11 -0.4 93,893 - H281DRAFT_02517 0.11 -0.2 93,895 - H281DRAFT_02517 0.12 -1.5 94,045 - H281DRAFT_02517 0.30 -0.9 94,191 + H281DRAFT_02517 0.48 +1.2 94,260 + H281DRAFT_02517 0.56 -0.1 94,273 + H281DRAFT_02517 0.58 +0.4 94,273 + H281DRAFT_02517 0.58 +1.0 94,273 + H281DRAFT_02517 0.58 -0.2 94,273 + H281DRAFT_02517 0.58 +0.7 94,273 + H281DRAFT_02517 0.58 +0.1 94,273 + H281DRAFT_02517 0.58 +0.3 94,274 - H281DRAFT_02517 0.58 -2.3 94,297 + H281DRAFT_02517 0.61 +0.4 94,298 - H281DRAFT_02517 0.61 +1.8 94,361 + H281DRAFT_02517 0.68 -0.2 94,361 + H281DRAFT_02517 0.68 -0.3 94,361 + H281DRAFT_02517 0.68 -0.4 94,413 + H281DRAFT_02517 0.75 +0.3 94,414 - H281DRAFT_02517 0.75 +0.9 94,416 + H281DRAFT_02517 0.75 +0.4 94,541 + +3.6 94,544 - -0.2 94,544 - -0.1 94,721 + -0.3 94,797 + H281DRAFT_02518 0.10 -0.8 94,911 + H281DRAFT_02518 0.31 +0.2 95,113 + H281DRAFT_02518 0.69 -1.7 95,114 - H281DRAFT_02518 0.69 -1.1 95,181 - H281DRAFT_02518 0.82 +0.4 95,270 - -0.3 95,365 + -0.2 95,393 - -1.4 95,438 + H281DRAFT_02519 0.15 +0.2 95,438 + H281DRAFT_02519 0.15 +0.3 95,438 + H281DRAFT_02519 0.15 +0.3 95,438 + H281DRAFT_02519 0.15 -0.9 95,439 - H281DRAFT_02519 0.16 +0.8 95,446 - H281DRAFT_02519 0.17 -1.8 95,528 + H281DRAFT_02519 0.38 +0.2 95,529 - H281DRAFT_02519 0.39 -0.3 95,604 - H281DRAFT_02519 0.58 +1.5
Or see this region's nucleotide sequence