Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_02463

Experiment: Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 1x

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_02462 and H281DRAFT_02463 are separated by 180 nucleotidesH281DRAFT_02463 and H281DRAFT_02464 are separated by 10 nucleotides H281DRAFT_02462: H281DRAFT_02462 - beta-lactamase class C, at 29,121 to 30,302 _02462 H281DRAFT_02463: H281DRAFT_02463 - choline dehydrogenase, at 30,483 to 32,168 _02463 H281DRAFT_02464: H281DRAFT_02464 - betaine aldehyde dehydrogenase, at 32,179 to 33,648 _02464 Position (kb) 30 31 32 33Strain fitness (log2 ratio) -2 -1 0 1at 29.555 kb on - strand, within H281DRAFT_02462at 29.610 kb on - strand, within H281DRAFT_02462at 29.610 kb on - strand, within H281DRAFT_02462at 29.610 kb on - strand, within H281DRAFT_02462at 29.654 kb on + strand, within H281DRAFT_02462at 29.656 kb on + strand, within H281DRAFT_02462at 29.656 kb on + strand, within H281DRAFT_02462at 29.656 kb on + strand, within H281DRAFT_02462at 29.656 kb on + strand, within H281DRAFT_02462at 29.656 kb on + strand, within H281DRAFT_02462at 29.657 kb on - strand, within H281DRAFT_02462at 29.771 kb on - strand, within H281DRAFT_02462at 29.795 kb on - strand, within H281DRAFT_02462at 29.818 kb on + strand, within H281DRAFT_02462at 29.944 kb on + strand, within H281DRAFT_02462at 29.945 kb on - strand, within H281DRAFT_02462at 29.945 kb on - strand, within H281DRAFT_02462at 30.076 kb on - strand, within H281DRAFT_02462at 30.099 kb on + strand, within H281DRAFT_02462at 30.099 kb on + strand, within H281DRAFT_02462at 30.103 kb on + strand, within H281DRAFT_02462at 30.103 kb on + strand, within H281DRAFT_02462at 30.103 kb on + strand, within H281DRAFT_02462at 30.103 kb on + strand, within H281DRAFT_02462at 30.104 kb on - strand, within H281DRAFT_02462at 30.152 kb on - strand, within H281DRAFT_02462at 30.152 kb on - strand, within H281DRAFT_02462at 30.279 kb on + strandat 30.279 kb on + strandat 30.294 kb on + strandat 30.295 kb on - strandat 30.303 kb on - strandat 30.535 kb on + strandat 30.536 kb on - strandat 30.925 kb on + strand, within H281DRAFT_02463at 31.054 kb on + strand, within H281DRAFT_02463at 31.055 kb on - strand, within H281DRAFT_02463at 31.222 kb on + strand, within H281DRAFT_02463at 31.223 kb on - strand, within H281DRAFT_02463at 31.258 kb on + strand, within H281DRAFT_02463at 31.259 kb on - strand, within H281DRAFT_02463at 31.259 kb on - strand, within H281DRAFT_02463at 31.259 kb on - strand, within H281DRAFT_02463at 31.874 kb on - strand, within H281DRAFT_02463at 31.874 kb on - strand, within H281DRAFT_02463at 31.874 kb on - strand, within H281DRAFT_02463at 31.981 kb on + strand, within H281DRAFT_02463at 32.045 kb on - strandat 32.045 kb on - strandat 32.147 kb on - strandat 32.147 kb on - strandat 32.235 kb on - strandat 32.325 kb on + strandat 32.326 kb on - strand, within H281DRAFT_02464at 32.326 kb on - strand, within H281DRAFT_02464at 32.763 kb on + strand, within H281DRAFT_02464at 32.763 kb on + strand, within H281DRAFT_02464at 32.764 kb on - strand, within H281DRAFT_02464at 33.075 kb on - strand, within H281DRAFT_02464

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Per-strain Table

Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 1x
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29,555 - H281DRAFT_02462 0.37 +0.5
29,610 - H281DRAFT_02462 0.41 -0.4
29,610 - H281DRAFT_02462 0.41 -1.3
29,610 - H281DRAFT_02462 0.41 +0.3
29,654 + H281DRAFT_02462 0.45 +0.1
29,656 + H281DRAFT_02462 0.45 -0.5
29,656 + H281DRAFT_02462 0.45 -0.2
29,656 + H281DRAFT_02462 0.45 +0.3
29,656 + H281DRAFT_02462 0.45 -0.8
29,656 + H281DRAFT_02462 0.45 -0.6
29,657 - H281DRAFT_02462 0.45 -1.8
29,771 - H281DRAFT_02462 0.55 +0.0
29,795 - H281DRAFT_02462 0.57 +0.4
29,818 + H281DRAFT_02462 0.59 +0.0
29,944 + H281DRAFT_02462 0.70 +0.2
29,945 - H281DRAFT_02462 0.70 +0.6
29,945 - H281DRAFT_02462 0.70 -0.3
30,076 - H281DRAFT_02462 0.81 -1.6
30,099 + H281DRAFT_02462 0.83 -0.7
30,099 + H281DRAFT_02462 0.83 +0.5
30,103 + H281DRAFT_02462 0.83 +1.6
30,103 + H281DRAFT_02462 0.83 +0.4
30,103 + H281DRAFT_02462 0.83 -0.6
30,103 + H281DRAFT_02462 0.83 +0.4
30,104 - H281DRAFT_02462 0.83 -0.9
30,152 - H281DRAFT_02462 0.87 +0.4
30,152 - H281DRAFT_02462 0.87 +0.5
30,279 + -0.0
30,279 + +0.3
30,294 + +1.1
30,295 - +0.0
30,303 - +1.2
30,535 + +0.5
30,536 - -0.0
30,925 + H281DRAFT_02463 0.26 -1.1
31,054 + H281DRAFT_02463 0.34 -0.1
31,055 - H281DRAFT_02463 0.34 +0.8
31,222 + H281DRAFT_02463 0.44 +0.1
31,223 - H281DRAFT_02463 0.44 +0.6
31,258 + H281DRAFT_02463 0.46 -0.1
31,259 - H281DRAFT_02463 0.46 -0.2
31,259 - H281DRAFT_02463 0.46 -0.1
31,259 - H281DRAFT_02463 0.46 -0.2
31,874 - H281DRAFT_02463 0.83 -0.7
31,874 - H281DRAFT_02463 0.83 +0.9
31,874 - H281DRAFT_02463 0.83 +0.1
31,981 + H281DRAFT_02463 0.89 +0.5
32,045 - +0.1
32,045 - +0.0
32,147 - +0.5
32,147 - -0.1
32,235 - -0.6
32,325 + +0.2
32,326 - H281DRAFT_02464 0.10 -0.9
32,326 - H281DRAFT_02464 0.10 +0.8
32,763 + H281DRAFT_02464 0.40 -0.5
32,763 + H281DRAFT_02464 0.40 -0.1
32,764 - H281DRAFT_02464 0.40 +1.5
33,075 - H281DRAFT_02464 0.61 -0.6

Or see this region's nucleotide sequence