Experiment: Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 1x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_02294 and H281DRAFT_02295 are separated by 35 nucleotides H281DRAFT_02295 and H281DRAFT_02296 are separated by 44 nucleotides H281DRAFT_02296 and H281DRAFT_02297 are separated by 79 nucleotides H281DRAFT_02297 and H281DRAFT_02298 are separated by 37 nucleotides
H281DRAFT_02294: H281DRAFT_02294 - ATP-dependent RNA helicase DbpA, at 440,150 to 441,553
_02294
H281DRAFT_02295: H281DRAFT_02295 - hypothetical protein, at 441,589 to 441,789
_02295
H281DRAFT_02296: H281DRAFT_02296 - transcriptional regulator, MerR family, at 441,834 to 442,265
_02296
H281DRAFT_02297: H281DRAFT_02297 - Cd2+/Zn2+-exporting ATPase, at 442,345 to 444,639
_02297
H281DRAFT_02298: H281DRAFT_02298 - transcriptional regulator, AraC family, at 444,677 to 445,738
_02298
Position (kb) 442
443
444
445 Strain fitness (log2 ratio) -6
-5
-4
-3
-2
-1
0
1
2
3 at 441.468 kb on + strand at 441.468 kb on + strand at 441.469 kb on - strand at 441.520 kb on + strand at 441.547 kb on + strand at 441.547 kb on + strand at 441.547 kb on + strand at 441.548 kb on - strand at 441.553 kb on + strand at 441.553 kb on + strand at 441.553 kb on + strand at 441.553 kb on + strand at 441.553 kb on + strand at 441.553 kb on + strand at 441.553 kb on + strand at 441.554 kb on - strand at 441.554 kb on - strand at 441.554 kb on - strand at 441.554 kb on - strand at 441.554 kb on - strand at 441.590 kb on + strand at 441.635 kb on + strand, within H281DRAFT_02295 at 441.635 kb on + strand, within H281DRAFT_02295 at 441.777 kb on + strand at 441.777 kb on + strand at 441.778 kb on - strand at 441.815 kb on - strand at 441.912 kb on + strand, within H281DRAFT_02296 at 441.912 kb on + strand, within H281DRAFT_02296 at 441.913 kb on - strand, within H281DRAFT_02296 at 441.913 kb on - strand, within H281DRAFT_02296 at 441.913 kb on - strand, within H281DRAFT_02296 at 442.004 kb on + strand, within H281DRAFT_02296 at 442.004 kb on + strand, within H281DRAFT_02296 at 442.005 kb on - strand, within H281DRAFT_02296 at 442.148 kb on + strand, within H281DRAFT_02296 at 442.150 kb on + strand, within H281DRAFT_02296 at 442.150 kb on + strand, within H281DRAFT_02296 at 442.151 kb on - strand, within H281DRAFT_02296 at 442.151 kb on - strand, within H281DRAFT_02296 at 442.191 kb on + strand, within H281DRAFT_02296 at 442.295 kb on + strand at 442.296 kb on - strand at 442.296 kb on - strand at 442.316 kb on + strand at 442.638 kb on - strand, within H281DRAFT_02297 at 442.753 kb on - strand, within H281DRAFT_02297 at 443.260 kb on - strand, within H281DRAFT_02297 at 443.260 kb on - strand, within H281DRAFT_02297 at 443.260 kb on - strand, within H281DRAFT_02297 at 443.564 kb on - strand, within H281DRAFT_02297 at 443.727 kb on + strand, within H281DRAFT_02297 at 443.962 kb on + strand, within H281DRAFT_02297 at 443.963 kb on - strand, within H281DRAFT_02297 at 444.224 kb on + strand, within H281DRAFT_02297 at 444.224 kb on + strand, within H281DRAFT_02297 at 444.225 kb on - strand, within H281DRAFT_02297 at 444.225 kb on - strand, within H281DRAFT_02297 at 444.228 kb on + strand, within H281DRAFT_02297 at 444.605 kb on + strand at 444.606 kb on - strand at 444.679 kb on - strand at 444.737 kb on - strand at 444.894 kb on + strand, within H281DRAFT_02298 at 444.894 kb on + strand, within H281DRAFT_02298 at 444.895 kb on - strand, within H281DRAFT_02298 at 444.933 kb on + strand, within H281DRAFT_02298 at 444.944 kb on - strand, within H281DRAFT_02298 at 445.014 kb on + strand, within H281DRAFT_02298 at 445.454 kb on - strand, within H281DRAFT_02298 at 445.591 kb on - strand, within H281DRAFT_02298 at 445.591 kb on - strand, within H281DRAFT_02298 at 445.591 kb on - strand, within H281DRAFT_02298
Per-strain Table
Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 1x remove 441,468 + +0.2 441,468 + +0.8 441,469 - +0.8 441,520 + +1.3 441,547 + -0.2 441,547 + -0.5 441,547 + +1.3 441,548 - +2.6 441,553 + +0.0 441,553 + +0.7 441,553 + -0.1 441,553 + +2.1 441,553 + +1.4 441,553 + +0.3 441,553 + +0.5 441,554 - -0.0 441,554 - +0.4 441,554 - -0.1 441,554 - -0.6 441,554 - +3.7 441,590 + +0.1 441,635 + H281DRAFT_02295 0.23 +1.4 441,635 + H281DRAFT_02295 0.23 +0.5 441,777 + +1.5 441,777 + -0.1 441,778 - +0.7 441,815 - -0.5 441,912 + H281DRAFT_02296 0.18 +0.4 441,912 + H281DRAFT_02296 0.18 +1.4 441,913 - H281DRAFT_02296 0.18 -4.9 441,913 - H281DRAFT_02296 0.18 -1.6 441,913 - H281DRAFT_02296 0.18 -5.9 442,004 + H281DRAFT_02296 0.39 -0.9 442,004 + H281DRAFT_02296 0.39 +0.1 442,005 - H281DRAFT_02296 0.40 -5.0 442,148 + H281DRAFT_02296 0.73 +0.2 442,150 + H281DRAFT_02296 0.73 +1.0 442,150 + H281DRAFT_02296 0.73 +0.7 442,151 - H281DRAFT_02296 0.73 -3.5 442,151 - H281DRAFT_02296 0.73 -5.7 442,191 + H281DRAFT_02296 0.83 -0.5 442,295 + +0.5 442,296 - -2.6 442,296 - -4.4 442,316 + -1.2 442,638 - H281DRAFT_02297 0.13 -2.5 442,753 - H281DRAFT_02297 0.18 -2.6 443,260 - H281DRAFT_02297 0.40 -4.1 443,260 - H281DRAFT_02297 0.40 -3.1 443,260 - H281DRAFT_02297 0.40 -3.9 443,564 - H281DRAFT_02297 0.53 -3.2 443,727 + H281DRAFT_02297 0.60 -4.6 443,962 + H281DRAFT_02297 0.70 -3.6 443,963 - H281DRAFT_02297 0.71 -2.1 444,224 + H281DRAFT_02297 0.82 -3.1 444,224 + H281DRAFT_02297 0.82 -4.1 444,225 - H281DRAFT_02297 0.82 -4.8 444,225 - H281DRAFT_02297 0.82 -3.3 444,228 + H281DRAFT_02297 0.82 -4.8 444,605 + -1.8 444,606 - -5.3 444,679 - -1.1 444,737 - -0.6 444,894 + H281DRAFT_02298 0.20 +0.7 444,894 + H281DRAFT_02298 0.20 +0.1 444,895 - H281DRAFT_02298 0.21 +1.2 444,933 + H281DRAFT_02298 0.24 -1.6 444,944 - H281DRAFT_02298 0.25 -0.4 445,014 + H281DRAFT_02298 0.32 +0.4 445,454 - H281DRAFT_02298 0.73 +1.1 445,591 - H281DRAFT_02298 0.86 -0.3 445,591 - H281DRAFT_02298 0.86 +0.4 445,591 - H281DRAFT_02298 0.86 +0.7
Or see this region's nucleotide sequence