Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_02131

Experiment: Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 1x

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntH281DRAFT_02130 and H281DRAFT_02131 are separated by 877 nucleotidesH281DRAFT_02131 and H281DRAFT_02132 overlap by 1 nucleotides H281DRAFT_02130: H281DRAFT_02130 - methyl-accepting chemotaxis sensory transducer, at 265,350 to 267,179 _02130 H281DRAFT_02131: H281DRAFT_02131 - hypothetical protein, at 268,057 to 269,271 _02131 H281DRAFT_02132: H281DRAFT_02132 - Caspase domain-containing protein, at 269,271 to 270,458 _02132 Position (kb) 268 269 270Strain fitness (log2 ratio) -2 -1 0 1 2 3at 267.217 kb on + strandat 267.217 kb on + strandat 267.217 kb on + strandat 267.217 kb on + strandat 267.397 kb on + strandat 267.397 kb on + strandat 267.398 kb on - strandat 267.478 kb on + strandat 267.512 kb on + strandat 267.513 kb on - strandat 267.513 kb on - strandat 267.513 kb on - strandat 267.513 kb on - strandat 267.691 kb on + strandat 267.691 kb on + strandat 267.692 kb on - strandat 267.692 kb on - strandat 267.886 kb on + strandat 267.886 kb on + strandat 267.887 kb on - strandat 267.887 kb on - strandat 267.954 kb on + strandat 267.955 kb on - strandat 267.955 kb on - strandat 267.955 kb on - strandat 267.955 kb on - strandat 267.973 kb on - strandat 267.979 kb on + strandat 267.979 kb on + strandat 267.979 kb on + strandat 267.979 kb on + strandat 267.980 kb on - strandat 267.980 kb on - strandat 267.980 kb on - strandat 267.982 kb on + strandat 268.056 kb on + strandat 268.056 kb on + strandat 268.056 kb on + strandat 268.056 kb on + strandat 268.056 kb on + strandat 268.057 kb on - strandat 268.057 kb on - strandat 268.086 kb on + strandat 268.086 kb on + strandat 268.086 kb on + strandat 268.108 kb on + strandat 268.108 kb on + strandat 268.158 kb on - strandat 268.187 kb on + strand, within H281DRAFT_02131at 268.187 kb on + strand, within H281DRAFT_02131at 268.187 kb on + strand, within H281DRAFT_02131at 268.188 kb on - strand, within H281DRAFT_02131at 268.383 kb on + strand, within H281DRAFT_02131at 268.384 kb on - strand, within H281DRAFT_02131at 268.409 kb on + strand, within H281DRAFT_02131at 268.410 kb on - strand, within H281DRAFT_02131at 268.410 kb on - strand, within H281DRAFT_02131at 268.410 kb on - strand, within H281DRAFT_02131at 268.410 kb on - strand, within H281DRAFT_02131at 268.426 kb on - strand, within H281DRAFT_02131at 268.459 kb on + strand, within H281DRAFT_02131at 268.460 kb on - strand, within H281DRAFT_02131at 268.470 kb on - strand, within H281DRAFT_02131at 268.481 kb on - strand, within H281DRAFT_02131at 268.481 kb on - strand, within H281DRAFT_02131at 268.498 kb on + strand, within H281DRAFT_02131at 268.498 kb on + strand, within H281DRAFT_02131at 268.498 kb on + strand, within H281DRAFT_02131at 268.498 kb on + strand, within H281DRAFT_02131at 268.499 kb on - strand, within H281DRAFT_02131at 268.499 kb on - strand, within H281DRAFT_02131at 268.499 kb on - strand, within H281DRAFT_02131at 268.499 kb on - strand, within H281DRAFT_02131at 268.499 kb on - strand, within H281DRAFT_02131at 268.499 kb on - strand, within H281DRAFT_02131at 268.503 kb on + strand, within H281DRAFT_02131at 268.503 kb on + strand, within H281DRAFT_02131at 268.504 kb on - strand, within H281DRAFT_02131at 268.504 kb on - strand, within H281DRAFT_02131at 268.504 kb on - strand, within H281DRAFT_02131at 268.504 kb on - strand, within H281DRAFT_02131at 268.504 kb on - strand, within H281DRAFT_02131at 268.716 kb on - strand, within H281DRAFT_02131at 268.780 kb on - strand, within H281DRAFT_02131at 268.783 kb on + strand, within H281DRAFT_02131at 268.800 kb on + strand, within H281DRAFT_02131at 268.800 kb on + strand, within H281DRAFT_02131at 268.824 kb on + strand, within H281DRAFT_02131at 268.874 kb on + strand, within H281DRAFT_02131at 268.874 kb on + strand, within H281DRAFT_02131at 268.892 kb on + strand, within H281DRAFT_02131at 268.893 kb on - strand, within H281DRAFT_02131at 268.896 kb on - strand, within H281DRAFT_02131at 268.896 kb on - strand, within H281DRAFT_02131at 268.911 kb on - strand, within H281DRAFT_02131at 268.927 kb on + strand, within H281DRAFT_02131at 268.927 kb on + strand, within H281DRAFT_02131at 268.927 kb on + strand, within H281DRAFT_02131at 268.928 kb on - strand, within H281DRAFT_02131at 268.958 kb on + strand, within H281DRAFT_02131at 268.959 kb on - strand, within H281DRAFT_02131at 268.959 kb on - strand, within H281DRAFT_02131at 269.001 kb on - strand, within H281DRAFT_02131at 269.001 kb on - strand, within H281DRAFT_02131at 269.021 kb on - strand, within H281DRAFT_02131at 269.025 kb on + strand, within H281DRAFT_02131at 269.025 kb on + strand, within H281DRAFT_02131at 269.025 kb on + strand, within H281DRAFT_02131at 269.025 kb on + strand, within H281DRAFT_02131at 269.026 kb on - strand, within H281DRAFT_02131at 269.026 kb on - strand, within H281DRAFT_02131at 269.026 kb on - strand, within H281DRAFT_02131at 269.028 kb on + strand, within H281DRAFT_02131at 269.028 kb on + strand, within H281DRAFT_02131at 269.107 kb on + strand, within H281DRAFT_02131at 269.107 kb on + strand, within H281DRAFT_02131at 269.107 kb on + strand, within H281DRAFT_02131at 269.107 kb on + strand, within H281DRAFT_02131at 269.107 kb on + strand, within H281DRAFT_02131at 269.107 kb on + strand, within H281DRAFT_02131at 269.107 kb on + strand, within H281DRAFT_02131at 269.107 kb on + strand, within H281DRAFT_02131at 269.107 kb on + strand, within H281DRAFT_02131at 269.107 kb on + strand, within H281DRAFT_02131at 269.108 kb on - strand, within H281DRAFT_02131at 269.108 kb on - strand, within H281DRAFT_02131at 269.108 kb on - strand, within H281DRAFT_02131at 269.108 kb on - strand, within H281DRAFT_02131at 269.108 kb on - strand, within H281DRAFT_02131at 269.108 kb on - strand, within H281DRAFT_02131at 269.112 kb on + strand, within H281DRAFT_02131at 269.112 kb on + strand, within H281DRAFT_02131at 269.113 kb on - strand, within H281DRAFT_02131at 269.113 kb on - strand, within H281DRAFT_02131at 269.113 kb on - strand, within H281DRAFT_02131at 269.167 kb on + strandat 269.168 kb on - strandat 269.185 kb on + strandat 269.212 kb on + strandat 269.234 kb on - strandat 269.236 kb on - strandat 269.243 kb on + strandat 269.249 kb on + strandat 269.269 kb on + strandat 269.270 kb on - strandat 269.299 kb on + strandat 269.499 kb on + strand, within H281DRAFT_02132at 269.499 kb on + strand, within H281DRAFT_02132at 269.499 kb on + strand, within H281DRAFT_02132at 269.499 kb on + strand, within H281DRAFT_02132at 269.499 kb on + strand, within H281DRAFT_02132at 269.500 kb on - strand, within H281DRAFT_02132at 269.500 kb on - strand, within H281DRAFT_02132at 269.500 kb on - strand, within H281DRAFT_02132at 269.500 kb on - strand, within H281DRAFT_02132at 269.579 kb on + strand, within H281DRAFT_02132at 269.579 kb on + strand, within H281DRAFT_02132at 269.623 kb on - strand, within H281DRAFT_02132at 269.623 kb on - strand, within H281DRAFT_02132at 269.780 kb on + strand, within H281DRAFT_02132at 269.795 kb on + strand, within H281DRAFT_02132at 269.831 kb on - strand, within H281DRAFT_02132at 269.843 kb on + strand, within H281DRAFT_02132at 269.843 kb on + strand, within H281DRAFT_02132at 269.843 kb on + strand, within H281DRAFT_02132at 269.843 kb on + strand, within H281DRAFT_02132at 269.843 kb on + strand, within H281DRAFT_02132at 269.843 kb on + strand, within H281DRAFT_02132at 269.843 kb on + strand, within H281DRAFT_02132at 269.844 kb on - strand, within H281DRAFT_02132at 269.844 kb on - strand, within H281DRAFT_02132at 269.844 kb on - strand, within H281DRAFT_02132at 269.844 kb on - strand, within H281DRAFT_02132at 269.844 kb on - strand, within H281DRAFT_02132at 269.844 kb on - strand, within H281DRAFT_02132at 269.844 kb on - strand, within H281DRAFT_02132at 269.844 kb on - strand, within H281DRAFT_02132at 269.853 kb on - strand, within H281DRAFT_02132at 269.853 kb on - strand, within H281DRAFT_02132at 269.867 kb on - strand, within H281DRAFT_02132at 269.923 kb on + strand, within H281DRAFT_02132at 269.924 kb on - strand, within H281DRAFT_02132at 269.927 kb on + strand, within H281DRAFT_02132at 269.928 kb on - strand, within H281DRAFT_02132at 269.928 kb on - strand, within H281DRAFT_02132at 269.944 kb on + strand, within H281DRAFT_02132at 269.945 kb on - strand, within H281DRAFT_02132at 269.945 kb on - strand, within H281DRAFT_02132at 269.973 kb on + strand, within H281DRAFT_02132at 269.974 kb on - strand, within H281DRAFT_02132at 270.113 kb on - strand, within H281DRAFT_02132at 270.187 kb on + strand, within H281DRAFT_02132at 270.187 kb on + strand, within H281DRAFT_02132at 270.187 kb on + strand, within H281DRAFT_02132at 270.188 kb on - strand, within H281DRAFT_02132at 270.188 kb on - strand, within H281DRAFT_02132at 270.188 kb on - strand, within H281DRAFT_02132at 270.188 kb on - strand, within H281DRAFT_02132at 270.188 kb on - strand, within H281DRAFT_02132at 270.188 kb on - strand, within H281DRAFT_02132at 270.191 kb on + strand, within H281DRAFT_02132at 270.191 kb on + strand, within H281DRAFT_02132at 270.191 kb on + strand, within H281DRAFT_02132at 270.191 kb on + strand, within H281DRAFT_02132at 270.191 kb on + strand, within H281DRAFT_02132at 270.191 kb on + strand, within H281DRAFT_02132at 270.191 kb on + strand, within H281DRAFT_02132at 270.192 kb on - strand, within H281DRAFT_02132at 270.192 kb on - strand, within H281DRAFT_02132at 270.192 kb on - strand, within H281DRAFT_02132at 270.192 kb on - strand, within H281DRAFT_02132at 270.192 kb on - strand, within H281DRAFT_02132at 270.192 kb on - strandat 270.192 kb on - strand, within H281DRAFT_02132at 270.192 kb on - strand, within H281DRAFT_02132at 270.192 kb on - strand, within H281DRAFT_02132

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 1x
remove
267,217 + +0.5
267,217 + +0.6
267,217 + -0.2
267,217 + +0.5
267,397 + -0.2
267,397 + +0.4
267,398 - +0.2
267,478 + -0.9
267,512 + +0.2
267,513 - +1.1
267,513 - +0.2
267,513 - -0.4
267,513 - +0.3
267,691 + +0.5
267,691 + +3.4
267,692 - +0.1
267,692 - +0.4
267,886 + -0.6
267,886 + +0.9
267,887 - +0.4
267,887 - -0.1
267,954 + -0.0
267,955 - +0.2
267,955 - -0.3
267,955 - -0.2
267,955 - -0.8
267,973 - -0.1
267,979 + +0.4
267,979 + -0.5
267,979 + +0.4
267,979 + -1.0
267,980 - +0.3
267,980 - +0.5
267,980 - -1.3
267,982 + +0.8
268,056 + -0.7
268,056 + +0.4
268,056 + -0.6
268,056 + +0.8
268,056 + +0.4
268,057 - +0.5
268,057 - +0.0
268,086 + -0.9
268,086 + +0.3
268,086 + +0.3
268,108 + -0.8
268,108 + +0.3
268,158 - +0.8
268,187 + H281DRAFT_02131 0.11 -1.3
268,187 + H281DRAFT_02131 0.11 +0.2
268,187 + H281DRAFT_02131 0.11 +1.1
268,188 - H281DRAFT_02131 0.11 -0.2
268,383 + H281DRAFT_02131 0.27 +0.4
268,384 - H281DRAFT_02131 0.27 -0.2
268,409 + H281DRAFT_02131 0.29 +0.4
268,410 - H281DRAFT_02131 0.29 -0.8
268,410 - H281DRAFT_02131 0.29 -0.2
268,410 - H281DRAFT_02131 0.29 +0.2
268,410 - H281DRAFT_02131 0.29 -0.2
268,426 - H281DRAFT_02131 0.30 -0.2
268,459 + H281DRAFT_02131 0.33 -0.6
268,460 - H281DRAFT_02131 0.33 -0.0
268,470 - H281DRAFT_02131 0.34 +0.2
268,481 - H281DRAFT_02131 0.35 -0.5
268,481 - H281DRAFT_02131 0.35 -0.1
268,498 + H281DRAFT_02131 0.36 +0.5
268,498 + H281DRAFT_02131 0.36 -0.3
268,498 + H281DRAFT_02131 0.36 +0.3
268,498 + H281DRAFT_02131 0.36 -0.1
268,499 - H281DRAFT_02131 0.36 +0.3
268,499 - H281DRAFT_02131 0.36 -0.8
268,499 - H281DRAFT_02131 0.36 +0.7
268,499 - H281DRAFT_02131 0.36 -0.1
268,499 - H281DRAFT_02131 0.36 +0.4
268,499 - H281DRAFT_02131 0.36 +0.2
268,503 + H281DRAFT_02131 0.37 -0.1
268,503 + H281DRAFT_02131 0.37 +0.8
268,504 - H281DRAFT_02131 0.37 -0.9
268,504 - H281DRAFT_02131 0.37 -0.5
268,504 - H281DRAFT_02131 0.37 +1.0
268,504 - H281DRAFT_02131 0.37 +0.4
268,504 - H281DRAFT_02131 0.37 -0.6
268,716 - H281DRAFT_02131 0.54 -0.1
268,780 - H281DRAFT_02131 0.60 +0.4
268,783 + H281DRAFT_02131 0.60 +0.4
268,800 + H281DRAFT_02131 0.61 +0.0
268,800 + H281DRAFT_02131 0.61 -0.8
268,824 + H281DRAFT_02131 0.63 +2.9
268,874 + H281DRAFT_02131 0.67 +0.6
268,874 + H281DRAFT_02131 0.67 +1.2
268,892 + H281DRAFT_02131 0.69 +1.3
268,893 - H281DRAFT_02131 0.69 +0.7
268,896 - H281DRAFT_02131 0.69 +0.5
268,896 - H281DRAFT_02131 0.69 +0.6
268,911 - H281DRAFT_02131 0.70 +0.7
268,927 + H281DRAFT_02131 0.72 -0.1
268,927 + H281DRAFT_02131 0.72 +1.3
268,927 + H281DRAFT_02131 0.72 +1.9
268,928 - H281DRAFT_02131 0.72 -0.4
268,958 + H281DRAFT_02131 0.74 +0.2
268,959 - H281DRAFT_02131 0.74 +0.9
268,959 - H281DRAFT_02131 0.74 +0.1
269,001 - H281DRAFT_02131 0.78 +0.5
269,001 - H281DRAFT_02131 0.78 +0.7
269,021 - H281DRAFT_02131 0.79 +0.0
269,025 + H281DRAFT_02131 0.80 -0.8
269,025 + H281DRAFT_02131 0.80 +0.6
269,025 + H281DRAFT_02131 0.80 +0.1
269,025 + H281DRAFT_02131 0.80 -1.4
269,026 - H281DRAFT_02131 0.80 +1.8
269,026 - H281DRAFT_02131 0.80 +0.7
269,026 - H281DRAFT_02131 0.80 -2.0
269,028 + H281DRAFT_02131 0.80 +0.6
269,028 + H281DRAFT_02131 0.80 -0.7
269,107 + H281DRAFT_02131 0.86 +0.0
269,107 + H281DRAFT_02131 0.86 -0.9
269,107 + H281DRAFT_02131 0.86 +0.2
269,107 + H281DRAFT_02131 0.86 +0.5
269,107 + H281DRAFT_02131 0.86 +0.9
269,107 + H281DRAFT_02131 0.86 +0.5
269,107 + H281DRAFT_02131 0.86 +0.4
269,107 + H281DRAFT_02131 0.86 +0.5
269,107 + H281DRAFT_02131 0.86 -0.5
269,107 + H281DRAFT_02131 0.86 +0.8
269,108 - H281DRAFT_02131 0.87 +1.7
269,108 - H281DRAFT_02131 0.87 -0.0
269,108 - H281DRAFT_02131 0.87 +0.5
269,108 - H281DRAFT_02131 0.87 -1.2
269,108 - H281DRAFT_02131 0.87 -0.1
269,108 - H281DRAFT_02131 0.87 +0.5
269,112 + H281DRAFT_02131 0.87 +0.4
269,112 + H281DRAFT_02131 0.87 +0.1
269,113 - H281DRAFT_02131 0.87 +0.4
269,113 - H281DRAFT_02131 0.87 +0.1
269,113 - H281DRAFT_02131 0.87 +0.8
269,167 + -0.5
269,168 - -1.0
269,185 + -0.2
269,212 + +0.4
269,234 - -0.0
269,236 - +0.0
269,243 + +1.1
269,249 + +0.3
269,269 + -1.0
269,270 - +0.3
269,299 + +0.7
269,499 + H281DRAFT_02132 0.19 -0.4
269,499 + H281DRAFT_02132 0.19 +0.4
269,499 + H281DRAFT_02132 0.19 +1.2
269,499 + H281DRAFT_02132 0.19 +0.2
269,499 + H281DRAFT_02132 0.19 -0.1
269,500 - H281DRAFT_02132 0.19 +0.5
269,500 - H281DRAFT_02132 0.19 +0.0
269,500 - H281DRAFT_02132 0.19 +1.1
269,500 - H281DRAFT_02132 0.19 +0.2
269,579 + H281DRAFT_02132 0.26 +0.5
269,579 + H281DRAFT_02132 0.26 -0.6
269,623 - H281DRAFT_02132 0.30 -0.2
269,623 - H281DRAFT_02132 0.30 +0.2
269,780 + H281DRAFT_02132 0.43 +1.5
269,795 + H281DRAFT_02132 0.44 -0.1
269,831 - H281DRAFT_02132 0.47 -0.9
269,843 + H281DRAFT_02132 0.48 +0.6
269,843 + H281DRAFT_02132 0.48 +1.0
269,843 + H281DRAFT_02132 0.48 +0.0
269,843 + H281DRAFT_02132 0.48 -0.1
269,843 + H281DRAFT_02132 0.48 +0.3
269,843 + H281DRAFT_02132 0.48 +1.1
269,843 + H281DRAFT_02132 0.48 +0.4
269,844 - H281DRAFT_02132 0.48 -1.3
269,844 - H281DRAFT_02132 0.48 -1.5
269,844 - H281DRAFT_02132 0.48 +1.8
269,844 - H281DRAFT_02132 0.48 +0.7
269,844 - H281DRAFT_02132 0.48 +0.3
269,844 - H281DRAFT_02132 0.48 +0.2
269,844 - H281DRAFT_02132 0.48 +0.4
269,844 - H281DRAFT_02132 0.48 -1.4
269,853 - H281DRAFT_02132 0.49 +0.8
269,853 - H281DRAFT_02132 0.49 +0.6
269,867 - H281DRAFT_02132 0.50 -0.0
269,923 + H281DRAFT_02132 0.55 -0.7
269,924 - H281DRAFT_02132 0.55 -0.1
269,927 + H281DRAFT_02132 0.55 -0.2
269,928 - H281DRAFT_02132 0.55 +0.9
269,928 - H281DRAFT_02132 0.55 +0.3
269,944 + H281DRAFT_02132 0.57 +0.9
269,945 - H281DRAFT_02132 0.57 +1.2
269,945 - H281DRAFT_02132 0.57 +0.7
269,973 + H281DRAFT_02132 0.59 -0.6
269,974 - H281DRAFT_02132 0.59 +0.5
270,113 - H281DRAFT_02132 0.71 -2.2
270,187 + H281DRAFT_02132 0.77 -0.0
270,187 + H281DRAFT_02132 0.77 -0.1
270,187 + H281DRAFT_02132 0.77 +0.7
270,188 - H281DRAFT_02132 0.77 +0.1
270,188 - H281DRAFT_02132 0.77 -0.0
270,188 - H281DRAFT_02132 0.77 +0.4
270,188 - H281DRAFT_02132 0.77 +0.9
270,188 - H281DRAFT_02132 0.77 -0.3
270,188 - H281DRAFT_02132 0.77 -1.1
270,191 + H281DRAFT_02132 0.77 -0.7
270,191 + H281DRAFT_02132 0.77 +0.7
270,191 + H281DRAFT_02132 0.77 -0.0
270,191 + H281DRAFT_02132 0.77 +0.8
270,191 + H281DRAFT_02132 0.77 -0.1
270,191 + H281DRAFT_02132 0.77 +0.8
270,191 + H281DRAFT_02132 0.77 +0.9
270,192 - H281DRAFT_02132 0.78 -0.1
270,192 - H281DRAFT_02132 0.78 -0.7
270,192 - H281DRAFT_02132 0.78 +0.7
270,192 - H281DRAFT_02132 0.78 +0.3
270,192 - H281DRAFT_02132 0.78 +0.1
270,192 - -1.2
270,192 - H281DRAFT_02132 0.78 -0.1
270,192 - H281DRAFT_02132 0.78 +0.4
270,192 - H281DRAFT_02132 0.78 +0.6

Or see this region's nucleotide sequence