Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_02120

Experiment: Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 1x

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_02118 and H281DRAFT_02119 are separated by 131 nucleotidesH281DRAFT_02119 and H281DRAFT_02120 are separated by 59 nucleotidesH281DRAFT_02120 and H281DRAFT_02121 are separated by 238 nucleotides H281DRAFT_02118: H281DRAFT_02118 - fructokinase, at 248,295 to 249,206 _02118 H281DRAFT_02119: H281DRAFT_02119 - hypothetical protein, at 249,338 to 249,568 _02119 H281DRAFT_02120: H281DRAFT_02120 - hypothetical protein, at 249,628 to 249,873 _02120 H281DRAFT_02121: H281DRAFT_02121 - inward rectifier potassium channel, at 250,112 to 251,074 _02121 Position (kb) 249 250Strain fitness (log2 ratio) -2 -1 0 1 2at 248.762 kb on - strand, within H281DRAFT_02118at 248.809 kb on - strand, within H281DRAFT_02118at 249.036 kb on - strand, within H281DRAFT_02118at 249.204 kb on + strandat 249.219 kb on - strandat 249.296 kb on + strandat 249.297 kb on - strandat 249.354 kb on - strandat 249.368 kb on + strand, within H281DRAFT_02119at 249.368 kb on + strand, within H281DRAFT_02119at 249.368 kb on + strand, within H281DRAFT_02119at 249.369 kb on - strand, within H281DRAFT_02119at 249.420 kb on + strand, within H281DRAFT_02119at 249.420 kb on + strand, within H281DRAFT_02119at 249.421 kb on - strand, within H281DRAFT_02119at 249.421 kb on - strand, within H281DRAFT_02119at 249.476 kb on + strand, within H281DRAFT_02119at 249.477 kb on - strand, within H281DRAFT_02119at 249.477 kb on - strand, within H281DRAFT_02119at 249.477 kb on - strand, within H281DRAFT_02119at 249.490 kb on + strand, within H281DRAFT_02119at 249.491 kb on - strand, within H281DRAFT_02119at 249.712 kb on + strand, within H281DRAFT_02120at 249.775 kb on + strand, within H281DRAFT_02120at 249.922 kb on - strandat 250.078 kb on - strandat 250.352 kb on + strand, within H281DRAFT_02121at 250.352 kb on + strand, within H281DRAFT_02121at 250.353 kb on - strand, within H281DRAFT_02121at 250.354 kb on + strand, within H281DRAFT_02121at 250.354 kb on + strand, within H281DRAFT_02121at 250.354 kb on + strand, within H281DRAFT_02121at 250.355 kb on - strand, within H281DRAFT_02121at 250.472 kb on + strand, within H281DRAFT_02121at 250.511 kb on - strand, within H281DRAFT_02121at 250.511 kb on - strand, within H281DRAFT_02121at 250.690 kb on + strand, within H281DRAFT_02121at 250.691 kb on - strand, within H281DRAFT_02121at 250.720 kb on + strand, within H281DRAFT_02121at 250.737 kb on - strand, within H281DRAFT_02121at 250.737 kb on - strand, within H281DRAFT_02121at 250.845 kb on + strand, within H281DRAFT_02121at 250.846 kb on - strand, within H281DRAFT_02121

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Per-strain Table

Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 1x
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248,762 - H281DRAFT_02118 0.51 +0.4
248,809 - H281DRAFT_02118 0.56 +0.7
249,036 - H281DRAFT_02118 0.81 +1.0
249,204 + +0.2
249,219 - +0.8
249,296 + +0.2
249,297 - -2.4
249,354 - +1.2
249,368 + H281DRAFT_02119 0.13 +0.1
249,368 + H281DRAFT_02119 0.13 +2.2
249,368 + H281DRAFT_02119 0.13 -0.5
249,369 - H281DRAFT_02119 0.13 -0.4
249,420 + H281DRAFT_02119 0.35 +1.5
249,420 + H281DRAFT_02119 0.35 +0.0
249,421 - H281DRAFT_02119 0.36 -0.6
249,421 - H281DRAFT_02119 0.36 -0.1
249,476 + H281DRAFT_02119 0.60 +0.7
249,477 - H281DRAFT_02119 0.60 -0.1
249,477 - H281DRAFT_02119 0.60 +1.0
249,477 - H281DRAFT_02119 0.60 +0.6
249,490 + H281DRAFT_02119 0.66 -1.3
249,491 - H281DRAFT_02119 0.66 +1.0
249,712 + H281DRAFT_02120 0.34 +0.1
249,775 + H281DRAFT_02120 0.60 -0.3
249,922 - +0.5
250,078 - +1.4
250,352 + H281DRAFT_02121 0.25 +0.6
250,352 + H281DRAFT_02121 0.25 -0.8
250,353 - H281DRAFT_02121 0.25 +0.3
250,354 + H281DRAFT_02121 0.25 -0.1
250,354 + H281DRAFT_02121 0.25 -0.3
250,354 + H281DRAFT_02121 0.25 -0.8
250,355 - H281DRAFT_02121 0.25 +0.8
250,472 + H281DRAFT_02121 0.37 +1.4
250,511 - H281DRAFT_02121 0.41 -0.5
250,511 - H281DRAFT_02121 0.41 +1.4
250,690 + H281DRAFT_02121 0.60 +1.2
250,691 - H281DRAFT_02121 0.60 +0.5
250,720 + H281DRAFT_02121 0.63 +0.8
250,737 - H281DRAFT_02121 0.65 +0.4
250,737 - H281DRAFT_02121 0.65 +0.1
250,845 + H281DRAFT_02121 0.76 -0.3
250,846 - H281DRAFT_02121 0.76 +0.5

Or see this region's nucleotide sequence