Experiment: Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 1x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_01907 and H281DRAFT_01908 overlap by 4 nucleotides H281DRAFT_01908 and H281DRAFT_01909 are separated by 167 nucleotides
H281DRAFT_01907: H281DRAFT_01907 - cytochrome c oxidase subunit 1, at 19,338 to 20,963
_01907
H281DRAFT_01908: H281DRAFT_01908 - Cytochrome c553, at 20,960 to 21,769
_01908
H281DRAFT_01909: H281DRAFT_01909 - methyl-accepting chemotaxis sensory transducer with TarH sensor, at 21,937 to 23,589
_01909
Position (kb) 20
21
22 Strain fitness (log2 ratio) -1
0
1
2
3 at 19.992 kb on + strand, within H281DRAFT_01907 at 20.013 kb on + strand, within H281DRAFT_01907 at 20.014 kb on - strand, within H281DRAFT_01907 at 20.016 kb on - strand, within H281DRAFT_01907 at 20.023 kb on - strand, within H281DRAFT_01907 at 20.025 kb on + strand, within H281DRAFT_01907 at 20.025 kb on + strand, within H281DRAFT_01907 at 20.025 kb on + strand, within H281DRAFT_01907 at 20.026 kb on - strand, within H281DRAFT_01907 at 20.026 kb on - strand, within H281DRAFT_01907 at 20.061 kb on + strand, within H281DRAFT_01907 at 20.062 kb on - strand, within H281DRAFT_01907 at 20.062 kb on - strand, within H281DRAFT_01907 at 20.388 kb on + strand, within H281DRAFT_01907 at 20.388 kb on + strand, within H281DRAFT_01907 at 20.399 kb on + strand, within H281DRAFT_01907 at 20.400 kb on - strand, within H281DRAFT_01907 at 20.400 kb on - strand, within H281DRAFT_01907 at 20.472 kb on + strand, within H281DRAFT_01907 at 20.598 kb on + strand, within H281DRAFT_01907 at 20.598 kb on + strand, within H281DRAFT_01907 at 20.599 kb on - strand, within H281DRAFT_01907 at 20.634 kb on + strand, within H281DRAFT_01907 at 20.637 kb on + strand, within H281DRAFT_01907 at 20.643 kb on + strand, within H281DRAFT_01907 at 20.644 kb on - strand, within H281DRAFT_01907 at 20.717 kb on - strand, within H281DRAFT_01907 at 20.736 kb on + strand, within H281DRAFT_01907 at 20.737 kb on - strand, within H281DRAFT_01907 at 20.737 kb on - strand, within H281DRAFT_01907 at 20.737 kb on - strand, within H281DRAFT_01907 at 20.837 kb on + strand at 20.838 kb on - strand at 20.886 kb on + strand at 20.886 kb on + strand at 20.887 kb on - strand at 21.052 kb on - strand, within H281DRAFT_01908 at 21.146 kb on + strand, within H281DRAFT_01908 at 21.147 kb on - strand, within H281DRAFT_01908 at 21.329 kb on + strand, within H281DRAFT_01908 at 21.345 kb on - strand, within H281DRAFT_01908 at 21.447 kb on - strand at 21.449 kb on + strand, within H281DRAFT_01908 at 21.449 kb on + strand at 21.450 kb on - strand, within H281DRAFT_01908 at 21.736 kb on + strand at 21.749 kb on + strand at 21.768 kb on - strand at 21.862 kb on - strand at 21.875 kb on - strand at 21.913 kb on - strand at 21.935 kb on + strand at 21.935 kb on + strand at 21.935 kb on + strand at 21.935 kb on + strand at 21.935 kb on + strand at 21.936 kb on - strand at 22.315 kb on - strand, within H281DRAFT_01909 at 22.501 kb on - strand, within H281DRAFT_01909 at 22.546 kb on + strand, within H281DRAFT_01909 at 22.547 kb on - strand, within H281DRAFT_01909 at 22.707 kb on + strand, within H281DRAFT_01909 at 22.707 kb on + strand at 22.708 kb on - strand, within H281DRAFT_01909
Per-strain Table
Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 1x remove 19,992 + H281DRAFT_01907 0.40 +0.2 20,013 + H281DRAFT_01907 0.42 +0.2 20,014 - H281DRAFT_01907 0.42 +1.0 20,016 - H281DRAFT_01907 0.42 +0.3 20,023 - H281DRAFT_01907 0.42 -0.2 20,025 + H281DRAFT_01907 0.42 +1.1 20,025 + H281DRAFT_01907 0.42 +0.9 20,025 + H281DRAFT_01907 0.42 +0.5 20,026 - H281DRAFT_01907 0.42 +0.7 20,026 - H281DRAFT_01907 0.42 -0.4 20,061 + H281DRAFT_01907 0.44 -0.3 20,062 - H281DRAFT_01907 0.45 -0.1 20,062 - H281DRAFT_01907 0.45 +1.7 20,388 + H281DRAFT_01907 0.65 -0.6 20,388 + H281DRAFT_01907 0.65 -0.1 20,399 + H281DRAFT_01907 0.65 +0.6 20,400 - H281DRAFT_01907 0.65 +1.3 20,400 - H281DRAFT_01907 0.65 -0.6 20,472 + H281DRAFT_01907 0.70 +0.5 20,598 + H281DRAFT_01907 0.77 +1.6 20,598 + H281DRAFT_01907 0.77 -0.5 20,599 - H281DRAFT_01907 0.78 +0.7 20,634 + H281DRAFT_01907 0.80 +1.2 20,637 + H281DRAFT_01907 0.80 -0.6 20,643 + H281DRAFT_01907 0.80 -0.1 20,644 - H281DRAFT_01907 0.80 -0.5 20,717 - H281DRAFT_01907 0.85 +1.5 20,736 + H281DRAFT_01907 0.86 +0.4 20,737 - H281DRAFT_01907 0.86 -1.7 20,737 - H281DRAFT_01907 0.86 +1.2 20,737 - H281DRAFT_01907 0.86 +0.8 20,837 + -0.1 20,838 - +1.4 20,886 + +0.1 20,886 + -0.6 20,887 - +2.3 21,052 - H281DRAFT_01908 0.11 +0.7 21,146 + H281DRAFT_01908 0.23 -0.2 21,147 - H281DRAFT_01908 0.23 +0.3 21,329 + H281DRAFT_01908 0.46 +2.6 21,345 - H281DRAFT_01908 0.48 +0.8 21,447 - -0.3 21,449 + H281DRAFT_01908 0.60 +0.4 21,449 + +1.3 21,450 - H281DRAFT_01908 0.60 -0.3 21,736 + +0.0 21,749 + +0.7 21,768 - +0.8 21,862 - -0.8 21,875 - +3.4 21,913 - +0.3 21,935 + -0.1 21,935 + +3.1 21,935 + -0.9 21,935 + -0.2 21,935 + +0.5 21,936 - -0.2 22,315 - H281DRAFT_01909 0.23 +0.9 22,501 - H281DRAFT_01909 0.34 -0.7 22,546 + H281DRAFT_01909 0.37 -0.2 22,547 - H281DRAFT_01909 0.37 +0.5 22,707 + H281DRAFT_01909 0.47 +2.3 22,707 + +0.3 22,708 - H281DRAFT_01909 0.47 +0.5
Or see this region's nucleotide sequence