Experiment: Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 1x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_01740 and H281DRAFT_01741 are separated by 433 nucleotides H281DRAFT_01741 and H281DRAFT_01742 are separated by 107 nucleotides H281DRAFT_01742 and H281DRAFT_01743 are separated by 258 nucleotides
H281DRAFT_01740: H281DRAFT_01740 - hypothetical protein, at 635,190 to 635,636
_01740
H281DRAFT_01741: H281DRAFT_01741 - 4-oxalocrotonate tautomerase, at 636,070 to 636,288
_01741
H281DRAFT_01742: H281DRAFT_01742 - putative oxidoreductase, at 636,396 to 636,902
_01742
H281DRAFT_01743: H281DRAFT_01743 - tripartite ATP-independent transporter solute receptor, DctP family, at 637,161 to 638,192
_01743
Position (kb) 636
637 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 635.601 kb on + strand at 635.602 kb on - strand at 635.651 kb on + strand at 635.714 kb on + strand at 635.714 kb on + strand at 635.906 kb on + strand at 635.907 kb on - strand at 636.055 kb on + strand at 636.056 kb on - strand at 636.070 kb on - strand at 636.164 kb on - strand, within H281DRAFT_01741 at 636.287 kb on - strand at 636.512 kb on - strand, within H281DRAFT_01742 at 636.660 kb on + strand, within H281DRAFT_01742 at 636.661 kb on - strand, within H281DRAFT_01742 at 636.698 kb on + strand, within H281DRAFT_01742 at 636.842 kb on + strand, within H281DRAFT_01742 at 636.842 kb on + strand, within H281DRAFT_01742 at 637.005 kb on + strand at 637.064 kb on - strand at 637.079 kb on + strand at 637.265 kb on + strand at 637.314 kb on + strand, within H281DRAFT_01743 at 637.380 kb on + strand, within H281DRAFT_01743 at 637.515 kb on + strand, within H281DRAFT_01743 at 637.516 kb on - strand, within H281DRAFT_01743 at 637.516 kb on - strand, within H281DRAFT_01743 at 637.851 kb on + strand, within H281DRAFT_01743 at 637.852 kb on - strand, within H281DRAFT_01743
Per-strain Table
Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 1x remove 635,601 + +0.2 635,602 - -0.7 635,651 + +0.7 635,714 + -0.7 635,714 + +0.5 635,906 + -0.3 635,907 - -0.4 636,055 + +0.2 636,056 - -0.1 636,070 - -0.1 636,164 - H281DRAFT_01741 0.43 -0.2 636,287 - +1.7 636,512 - H281DRAFT_01742 0.23 -0.7 636,660 + H281DRAFT_01742 0.52 -1.4 636,661 - H281DRAFT_01742 0.52 -1.7 636,698 + H281DRAFT_01742 0.60 -0.8 636,842 + H281DRAFT_01742 0.88 +0.3 636,842 + H281DRAFT_01742 0.88 +0.2 637,005 + +2.5 637,064 - -0.3 637,079 + -1.3 637,265 + +0.4 637,314 + H281DRAFT_01743 0.15 -1.6 637,380 + H281DRAFT_01743 0.21 +0.0 637,515 + H281DRAFT_01743 0.34 -0.9 637,516 - H281DRAFT_01743 0.34 -3.4 637,516 - H281DRAFT_01743 0.34 +1.1 637,851 + H281DRAFT_01743 0.67 -1.0 637,852 - H281DRAFT_01743 0.67 +0.9
Or see this region's nucleotide sequence