Experiment: Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 1x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_01639 and H281DRAFT_01640 are separated by 452 nucleotides H281DRAFT_01640 and H281DRAFT_01641 are separated by 135 nucleotides
H281DRAFT_01639: H281DRAFT_01639 - methyl-accepting chemotaxis protein, at 518,919 to 520,577
_01639
H281DRAFT_01640: H281DRAFT_01640 - transcriptional regulator, Crp/Fnr family, at 521,030 to 521,848
_01640
H281DRAFT_01641: H281DRAFT_01641 - ergothioneine biosynthesis protein EgtB, at 521,984 to 523,273
_01641
Position (kb) 521
522 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 520.099 kb on + strand, within H281DRAFT_01639 at 520.100 kb on - strand, within H281DRAFT_01639 at 520.103 kb on - strand, within H281DRAFT_01639 at 520.103 kb on - strand, within H281DRAFT_01639 at 520.135 kb on + strand, within H281DRAFT_01639 at 520.316 kb on - strand, within H281DRAFT_01639 at 520.325 kb on + strand, within H281DRAFT_01639 at 520.325 kb on + strand, within H281DRAFT_01639 at 520.325 kb on + strand, within H281DRAFT_01639 at 520.325 kb on + strand, within H281DRAFT_01639 at 520.325 kb on + strand, within H281DRAFT_01639 at 520.326 kb on - strand, within H281DRAFT_01639 at 520.327 kb on + strand, within H281DRAFT_01639 at 520.327 kb on + strand, within H281DRAFT_01639 at 520.328 kb on - strand, within H281DRAFT_01639 at 520.352 kb on + strand, within H281DRAFT_01639 at 520.584 kb on - strand at 520.584 kb on - strand at 520.634 kb on + strand at 520.756 kb on + strand at 520.756 kb on + strand at 520.943 kb on + strand at 520.943 kb on + strand at 520.943 kb on + strand at 521.008 kb on + strand at 521.035 kb on + strand at 521.035 kb on + strand at 521.035 kb on + strand at 521.035 kb on + strand at 521.036 kb on - strand at 521.036 kb on - strand at 521.036 kb on - strand at 521.036 kb on - strand at 521.202 kb on + strand, within H281DRAFT_01640 at 521.202 kb on + strand, within H281DRAFT_01640 at 521.202 kb on + strand, within H281DRAFT_01640 at 521.202 kb on + strand, within H281DRAFT_01640 at 521.202 kb on + strand, within H281DRAFT_01640 at 521.203 kb on - strand, within H281DRAFT_01640 at 521.203 kb on - strand, within H281DRAFT_01640 at 521.203 kb on - strand, within H281DRAFT_01640 at 521.203 kb on - strand, within H281DRAFT_01640 at 521.324 kb on + strand, within H281DRAFT_01640 at 521.324 kb on + strand, within H281DRAFT_01640 at 521.325 kb on - strand, within H281DRAFT_01640 at 521.495 kb on + strand, within H281DRAFT_01640 at 522.126 kb on - strand, within H281DRAFT_01641 at 522.126 kb on - strand, within H281DRAFT_01641 at 522.126 kb on - strand, within H281DRAFT_01641 at 522.155 kb on - strand, within H281DRAFT_01641 at 522.237 kb on + strand, within H281DRAFT_01641 at 522.645 kb on - strand, within H281DRAFT_01641 at 522.646 kb on + strand, within H281DRAFT_01641 at 522.646 kb on + strand, within H281DRAFT_01641 at 522.646 kb on + strand, within H281DRAFT_01641 at 522.646 kb on + strand, within H281DRAFT_01641 at 522.647 kb on - strand, within H281DRAFT_01641 at 522.647 kb on - strand, within H281DRAFT_01641 at 522.647 kb on - strand, within H281DRAFT_01641 at 522.647 kb on - strand, within H281DRAFT_01641
Per-strain Table
Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 1x remove 520,099 + H281DRAFT_01639 0.71 -1.7 520,100 - H281DRAFT_01639 0.71 -0.1 520,103 - H281DRAFT_01639 0.71 +0.2 520,103 - H281DRAFT_01639 0.71 +0.8 520,135 + H281DRAFT_01639 0.73 +0.9 520,316 - H281DRAFT_01639 0.84 +0.5 520,325 + H281DRAFT_01639 0.85 +0.1 520,325 + H281DRAFT_01639 0.85 +0.7 520,325 + H281DRAFT_01639 0.85 -0.3 520,325 + H281DRAFT_01639 0.85 +0.0 520,325 + H281DRAFT_01639 0.85 +1.2 520,326 - H281DRAFT_01639 0.85 +0.9 520,327 + H281DRAFT_01639 0.85 +0.7 520,327 + H281DRAFT_01639 0.85 +1.1 520,328 - H281DRAFT_01639 0.85 -0.0 520,352 + H281DRAFT_01639 0.86 +0.8 520,584 - +0.9 520,584 - -0.3 520,634 + -0.0 520,756 + +0.7 520,756 + +1.1 520,943 + +1.8 520,943 + +3.4 520,943 + -1.4 521,008 + +0.2 521,035 + -0.9 521,035 + -0.5 521,035 + -0.1 521,035 + -1.0 521,036 - +0.4 521,036 - -2.1 521,036 - -1.4 521,036 - -0.7 521,202 + H281DRAFT_01640 0.21 -1.4 521,202 + H281DRAFT_01640 0.21 -1.7 521,202 + H281DRAFT_01640 0.21 -0.9 521,202 + H281DRAFT_01640 0.21 -1.7 521,202 + H281DRAFT_01640 0.21 -2.7 521,203 - H281DRAFT_01640 0.21 -1.6 521,203 - H281DRAFT_01640 0.21 -1.5 521,203 - H281DRAFT_01640 0.21 -1.5 521,203 - H281DRAFT_01640 0.21 -1.0 521,324 + H281DRAFT_01640 0.36 +2.9 521,324 + H281DRAFT_01640 0.36 -2.1 521,325 - H281DRAFT_01640 0.36 -2.0 521,495 + H281DRAFT_01640 0.57 -2.3 522,126 - H281DRAFT_01641 0.11 -0.4 522,126 - H281DRAFT_01641 0.11 -0.6 522,126 - H281DRAFT_01641 0.11 -0.7 522,155 - H281DRAFT_01641 0.13 -1.0 522,237 + H281DRAFT_01641 0.20 -0.4 522,645 - H281DRAFT_01641 0.51 +0.1 522,646 + H281DRAFT_01641 0.51 +0.1 522,646 + H281DRAFT_01641 0.51 +0.8 522,646 + H281DRAFT_01641 0.51 +0.1 522,646 + H281DRAFT_01641 0.51 -0.5 522,647 - H281DRAFT_01641 0.51 -1.9 522,647 - H281DRAFT_01641 0.51 +0.0 522,647 - H281DRAFT_01641 0.51 -0.7 522,647 - H281DRAFT_01641 0.51 -0.0
Or see this region's nucleotide sequence