Experiment: Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 1x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_01598 and H281DRAFT_01599 are separated by 126 nucleotides H281DRAFT_01599 and H281DRAFT_01600 are separated by 39 nucleotides
H281DRAFT_01598: H281DRAFT_01598 - transcriptional regulator, LysR family, at 476,759 to 477,688
_01598
H281DRAFT_01599: H281DRAFT_01599 - GTP cyclohydrolase I, at 477,815 to 478,453
_01599
H281DRAFT_01600: H281DRAFT_01600 - Permease of the drug/metabolite transporter (DMT) superfamily, at 478,493 to 479,401
_01600
Position (kb) 477
478
479 Strain fitness (log2 ratio) -1
0
1
2 at 476.935 kb on + strand, within H281DRAFT_01598 at 476.935 kb on + strand, within H281DRAFT_01598 at 476.937 kb on - strand, within H281DRAFT_01598 at 477.049 kb on + strand, within H281DRAFT_01598 at 477.050 kb on - strand, within H281DRAFT_01598 at 477.050 kb on - strand, within H281DRAFT_01598 at 477.518 kb on + strand, within H281DRAFT_01598 at 477.519 kb on - strand, within H281DRAFT_01598 at 477.974 kb on + strand, within H281DRAFT_01599 at 477.975 kb on - strand, within H281DRAFT_01599 at 478.451 kb on + strand at 478.452 kb on - strand at 478.601 kb on + strand, within H281DRAFT_01600 at 478.690 kb on - strand, within H281DRAFT_01600 at 478.806 kb on - strand, within H281DRAFT_01600 at 478.937 kb on - strand, within H281DRAFT_01600 at 478.937 kb on - strand, within H281DRAFT_01600 at 479.377 kb on + strand at 479.377 kb on + strand at 479.377 kb on + strand at 479.377 kb on + strand at 479.377 kb on + strand at 479.377 kb on + strand at 479.377 kb on + strand at 479.378 kb on - strand at 479.378 kb on - strand at 479.378 kb on - strand at 479.380 kb on - strand at 479.380 kb on - strand at 479.388 kb on + strand at 479.389 kb on - strand at 479.389 kb on - strand at 479.438 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 1x remove 476,935 + H281DRAFT_01598 0.19 -1.2 476,935 + H281DRAFT_01598 0.19 -1.2 476,937 - H281DRAFT_01598 0.19 -1.3 477,049 + H281DRAFT_01598 0.31 -0.0 477,050 - H281DRAFT_01598 0.31 +0.1 477,050 - H281DRAFT_01598 0.31 -0.4 477,518 + H281DRAFT_01598 0.82 -0.5 477,519 - H281DRAFT_01598 0.82 +1.9 477,974 + H281DRAFT_01599 0.25 -0.1 477,975 - H281DRAFT_01599 0.25 -1.2 478,451 + -1.0 478,452 - -0.1 478,601 + H281DRAFT_01600 0.12 +0.9 478,690 - H281DRAFT_01600 0.22 -0.5 478,806 - H281DRAFT_01600 0.34 +0.2 478,937 - H281DRAFT_01600 0.49 -0.0 478,937 - H281DRAFT_01600 0.49 -1.3 479,377 + -0.8 479,377 + +0.1 479,377 + +1.3 479,377 + -0.4 479,377 + +0.6 479,377 + +1.1 479,377 + -0.3 479,378 - +2.0 479,378 - -0.8 479,378 - -0.4 479,380 - -0.7 479,380 - +0.0 479,388 + +1.0 479,389 - +0.5 479,389 - +1.4 479,438 + -0.1
Or see this region's nucleotide sequence