Experiment: Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 1x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_01530 and H281DRAFT_01531 are separated by 196 nucleotides H281DRAFT_01531 and H281DRAFT_01532 are separated by 39 nucleotides H281DRAFT_01532 and H281DRAFT_01533 are separated by 52 nucleotides
H281DRAFT_01530: H281DRAFT_01530 - Uncharacterized membrane-anchored protein, at 403,226 to 404,014
_01530
H281DRAFT_01531: H281DRAFT_01531 - protein of unknown function (DUF4148), at 404,211 to 404,537
_01531
H281DRAFT_01532: H281DRAFT_01532 - Glyoxalase-like domain-containing protein, at 404,577 to 404,960
_01532
H281DRAFT_01533: H281DRAFT_01533 - transcriptional regulator, LysR family, at 405,013 to 405,933
_01533
Position (kb) 404
405 Strain fitness (log2 ratio) -1
0
1 at 403.273 kb on + strand at 403.313 kb on + strand, within H281DRAFT_01530 at 403.588 kb on - strand, within H281DRAFT_01530 at 403.604 kb on - strand, within H281DRAFT_01530 at 404.041 kb on + strand at 404.041 kb on + strand at 404.041 kb on + strand at 404.042 kb on - strand at 404.129 kb on - strand at 404.223 kb on + strand at 404.224 kb on - strand at 404.224 kb on - strand at 404.339 kb on + strand, within H281DRAFT_01531 at 404.340 kb on - strand, within H281DRAFT_01531 at 404.389 kb on - strand, within H281DRAFT_01531 at 404.567 kb on - strand at 404.728 kb on - strand, within H281DRAFT_01532 at 405.099 kb on - strand at 405.414 kb on - strand, within H281DRAFT_01533 at 405.414 kb on - strand, within H281DRAFT_01533
Per-strain Table
Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 1x remove 403,273 + -0.2 403,313 + H281DRAFT_01530 0.11 +0.2 403,588 - H281DRAFT_01530 0.46 -0.0 403,604 - H281DRAFT_01530 0.48 -0.4 404,041 + -1.0 404,041 + -1.0 404,041 + +0.1 404,042 - -0.2 404,129 - +0.0 404,223 + +0.2 404,224 - -0.7 404,224 - -0.1 404,339 + H281DRAFT_01531 0.39 +0.9 404,340 - H281DRAFT_01531 0.39 +0.4 404,389 - H281DRAFT_01531 0.54 +0.6 404,567 - -0.4 404,728 - H281DRAFT_01532 0.39 -0.1 405,099 - -0.3 405,414 - H281DRAFT_01533 0.44 +0.8 405,414 - H281DRAFT_01533 0.44 -0.1
Or see this region's nucleotide sequence