Experiment: Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 1x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_01415 and H281DRAFT_01416 are separated by 267 nucleotides H281DRAFT_01416 and H281DRAFT_01417 are separated by 311 nucleotides H281DRAFT_01417 and H281DRAFT_01418 are separated by 106 nucleotides
H281DRAFT_01415: H281DRAFT_01415 - hypothetical protein, at 267,774 to 267,989
_01415
H281DRAFT_01416: H281DRAFT_01416 - NADH dehydrogenase, at 268,257 to 269,486
_01416
H281DRAFT_01417: H281DRAFT_01417 - anti-sigma-28 factor, FlgM family, at 269,798 to 270,109
_01417
H281DRAFT_01418: H281DRAFT_01418 - Signal transduction histidine kinase, at 270,216 to 274,808
_01418
Position (kb) 268
269
270 Strain fitness (log2 ratio) -1
0
1 at 267.444 kb on + strand at 267.445 kb on - strand at 267.449 kb on + strand at 267.450 kb on - strand at 267.685 kb on + strand at 268.109 kb on - strand at 268.408 kb on - strand, within H281DRAFT_01416 at 268.490 kb on + strand, within H281DRAFT_01416 at 269.007 kb on - strand, within H281DRAFT_01416 at 269.289 kb on - strand, within H281DRAFT_01416 at 269.627 kb on + strand at 269.628 kb on - strand at 269.628 kb on - strand at 269.926 kb on + strand, within H281DRAFT_01417 at 269.941 kb on + strand, within H281DRAFT_01417 at 270.140 kb on + strand at 270.395 kb on + strand at 270.396 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 1x remove 267,444 + -0.6 267,445 - -0.2 267,449 + +0.6 267,450 - +0.0 267,685 + -0.7 268,109 - -1.1 268,408 - H281DRAFT_01416 0.12 -1.2 268,490 + H281DRAFT_01416 0.19 -0.7 269,007 - H281DRAFT_01416 0.61 -0.0 269,289 - H281DRAFT_01416 0.84 +0.1 269,627 + -0.2 269,628 - -1.0 269,628 - -0.4 269,926 + H281DRAFT_01417 0.41 +0.5 269,941 + H281DRAFT_01417 0.46 -0.6 270,140 + -0.4 270,395 + -0.4 270,396 - +0.7
Or see this region's nucleotide sequence