Experiment: Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 1x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_01269 and H281DRAFT_01270 are separated by 157 nucleotides H281DRAFT_01270 and H281DRAFT_01271 are separated by 62 nucleotides H281DRAFT_01271 and H281DRAFT_01272 are separated by 442 nucleotides
H281DRAFT_01269: H281DRAFT_01269 - DNA-binding transcriptional regulator, LysR family, at 102,876 to 103,886
_01269
H281DRAFT_01270: H281DRAFT_01270 - Uncharacterized conserved protein YbjT, contains NAD(P)-binding and DUF2867 domains, at 104,044 to 104,799
_01270
H281DRAFT_01271: H281DRAFT_01271 - diguanylate cyclase (GGDEF) domain-containing protein, at 104,862 to 106,040
_01271
H281DRAFT_01272: H281DRAFT_01272 - hypothetical protein, at 106,483 to 107,670
_01272
Position (kb) 104
105
106
107 Strain fitness (log2 ratio) -1
0
1
2 at 104.416 kb on + strand, within H281DRAFT_01270 at 104.416 kb on + strand, within H281DRAFT_01270 at 104.417 kb on - strand, within H281DRAFT_01270 at 104.639 kb on - strand, within H281DRAFT_01270 at 104.867 kb on + strand at 105.466 kb on + strand, within H281DRAFT_01271 at 105.679 kb on + strand, within H281DRAFT_01271 at 106.215 kb on + strand at 106.215 kb on + strand at 106.216 kb on - strand at 106.216 kb on - strand at 106.277 kb on - strand at 106.441 kb on + strand at 106.764 kb on + strand, within H281DRAFT_01272 at 106.931 kb on - strand, within H281DRAFT_01272
Per-strain Table
Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 1x remove 104,416 + H281DRAFT_01270 0.49 +0.2 104,416 + H281DRAFT_01270 0.49 +2.1 104,417 - H281DRAFT_01270 0.49 -0.1 104,639 - H281DRAFT_01270 0.79 -0.1 104,867 + -0.5 105,466 + H281DRAFT_01271 0.51 +0.1 105,679 + H281DRAFT_01271 0.69 +1.9 106,215 + -1.1 106,215 + +1.3 106,216 - -0.6 106,216 - +0.1 106,277 - +1.1 106,441 + +1.8 106,764 + H281DRAFT_01272 0.24 +0.1 106,931 - H281DRAFT_01272 0.38 -0.1
Or see this region's nucleotide sequence