Experiment: Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 1x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_01254 and H281DRAFT_01255 are separated by 126 nucleotides H281DRAFT_01255 and H281DRAFT_01256 overlap by 31 nucleotides H281DRAFT_01256 and H281DRAFT_01257 are separated by 231 nucleotides H281DRAFT_01257 and H281DRAFT_01258 are separated by 47 nucleotides
H281DRAFT_01254: H281DRAFT_01254 - Fatty acid desaturase, at 89,739 to 90,719
_01254
H281DRAFT_01255: H281DRAFT_01255 - transcriptional regulator, TetR family, at 90,846 to 91,139
_01255
H281DRAFT_01256: H281DRAFT_01256 - hypothetical protein, at 91,109 to 91,486
_01256
H281DRAFT_01257: H281DRAFT_01257 - Catechol 2,3-dioxygenase, at 91,718 to 92,116
_01257
H281DRAFT_01258: H281DRAFT_01258 - transcriptional regulator, LysR family, at 92,164 to 93,117
_01258
Position (kb) 91
92 Strain fitness (log2 ratio) -1
0
1
2 at 90.109 kb on - strand, within H281DRAFT_01254 at 90.177 kb on - strand, within H281DRAFT_01254 at 90.251 kb on - strand, within H281DRAFT_01254 at 90.330 kb on + strand, within H281DRAFT_01254 at 90.331 kb on - strand, within H281DRAFT_01254 at 90.341 kb on + strand, within H281DRAFT_01254 at 90.579 kb on + strand, within H281DRAFT_01254 at 90.579 kb on + strand, within H281DRAFT_01254 at 90.808 kb on - strand at 90.821 kb on - strand at 90.821 kb on - strand at 90.821 kb on - strand at 91.174 kb on - strand, within H281DRAFT_01256 at 91.225 kb on + strand, within H281DRAFT_01256 at 91.226 kb on - strand, within H281DRAFT_01256 at 91.501 kb on + strand at 91.563 kb on + strand at 91.700 kb on + strand at 91.701 kb on - strand at 91.701 kb on - strand at 91.802 kb on + strand, within H281DRAFT_01257 at 92.115 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 1x remove 90,109 - H281DRAFT_01254 0.38 -1.5 90,177 - H281DRAFT_01254 0.45 +0.7 90,251 - H281DRAFT_01254 0.52 -0.4 90,330 + H281DRAFT_01254 0.60 +0.3 90,331 - H281DRAFT_01254 0.60 +0.5 90,341 + H281DRAFT_01254 0.61 +0.4 90,579 + H281DRAFT_01254 0.86 -0.0 90,579 + H281DRAFT_01254 0.86 +0.5 90,808 - +1.1 90,821 - -0.4 90,821 - -0.4 90,821 - -1.2 91,174 - H281DRAFT_01256 0.17 -0.1 91,225 + H281DRAFT_01256 0.31 +2.0 91,226 - H281DRAFT_01256 0.31 -1.6 91,501 + +0.3 91,563 + -0.5 91,700 + +0.4 91,701 - +0.6 91,701 - +0.3 91,802 + H281DRAFT_01257 0.21 -0.9 92,115 - -0.8
Or see this region's nucleotide sequence