Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_01170

Experiment: Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 1x

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_01169 and H281DRAFT_01170 overlap by 4 nucleotidesH281DRAFT_01170 and H281DRAFT_01171 overlap by 4 nucleotides H281DRAFT_01169: H281DRAFT_01169 - Crotonobetainyl-CoA:carnitine CoA-transferase CaiB, at 705 to 1,907 _01169 H281DRAFT_01170: H281DRAFT_01170 - Alkyl sulfatase BDS1, metallo-beta-lactamase superfamily, at 1,904 to 3,889 _01170 H281DRAFT_01171: H281DRAFT_01171 - alcohol dehydrogenase, propanol-preferring, at 3,886 to 4,956 _01171 Position (kb) 1 2 3 4Strain fitness (log2 ratio) -1 0 1 2at 1.326 kb on + strand, within H281DRAFT_01169at 1.498 kb on + strand, within H281DRAFT_01169at 1.552 kb on + strand, within H281DRAFT_01169at 1.556 kb on + strand, within H281DRAFT_01169at 1.588 kb on + strand, within H281DRAFT_01169at 1.738 kb on + strand, within H281DRAFT_01169at 2.638 kb on + strand, within H281DRAFT_01170at 2.641 kb on - strand, within H281DRAFT_01170at 2.641 kb on - strand, within H281DRAFT_01170at 2.641 kb on - strand, within H281DRAFT_01170at 2.641 kb on - strand, within H281DRAFT_01170at 3.396 kb on + strand, within H281DRAFT_01170at 3.586 kb on + strand, within H281DRAFT_01170at 3.586 kb on + strand, within H281DRAFT_01170at 3.587 kb on - strand, within H281DRAFT_01170at 3.700 kb on - strandat 4.112 kb on - strand, within H281DRAFT_01171at 4.149 kb on - strand, within H281DRAFT_01171at 4.347 kb on + strand, within H281DRAFT_01171at 4.613 kb on - strand, within H281DRAFT_01171

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Per-strain Table

Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 1x
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1,326 + H281DRAFT_01169 0.52 -0.1
1,498 + H281DRAFT_01169 0.66 +0.1
1,552 + H281DRAFT_01169 0.70 +0.7
1,556 + H281DRAFT_01169 0.71 -1.1
1,588 + H281DRAFT_01169 0.73 +1.2
1,738 + H281DRAFT_01169 0.86 +0.8
2,638 + H281DRAFT_01170 0.37 +2.3
2,641 - H281DRAFT_01170 0.37 +0.2
2,641 - H281DRAFT_01170 0.37 -0.3
2,641 - H281DRAFT_01170 0.37 -0.2
2,641 - H281DRAFT_01170 0.37 +0.0
3,396 + H281DRAFT_01170 0.75 -1.4
3,586 + H281DRAFT_01170 0.85 -0.7
3,586 + H281DRAFT_01170 0.85 -0.3
3,587 - H281DRAFT_01170 0.85 +0.4
3,700 - +0.9
4,112 - H281DRAFT_01171 0.21 -0.9
4,149 - H281DRAFT_01171 0.25 -1.2
4,347 + H281DRAFT_01171 0.43 +0.8
4,613 - H281DRAFT_01171 0.68 -0.4

Or see this region's nucleotide sequence