Experiment: Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 1x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_00929 and H281DRAFT_00930 are separated by 93 nucleotides H281DRAFT_00930 and H281DRAFT_00931 are separated by 70 nucleotides H281DRAFT_00931 and H281DRAFT_00932 are separated by 46 nucleotides H281DRAFT_00932 and H281DRAFT_00933 are separated by 176 nucleotides
H281DRAFT_00929: H281DRAFT_00929 - DNA polymerase III, delta prime subunit, at 1,032,813 to 1,033,847
_00929
H281DRAFT_00930: H281DRAFT_00930 - phosphinothricin acetyltransferase, at 1,033,941 to 1,034,465
_00930
H281DRAFT_00931: H281DRAFT_00931 - TatD DNase family protein, at 1,034,536 to 1,035,330
_00931
H281DRAFT_00932: H281DRAFT_00932 - hypothetical protein, at 1,035,377 to 1,036,117
_00932
H281DRAFT_00933: H281DRAFT_00933 - hypothetical protein, at 1,036,294 to 1,036,650
_00933
Position (kb) 1034
1035
1036 Strain fitness (log2 ratio) -2
-1
0
1 at 1033.903 kb on - strand at 1033.998 kb on + strand, within H281DRAFT_00930 at 1034.053 kb on + strand, within H281DRAFT_00930 at 1034.053 kb on + strand, within H281DRAFT_00930 at 1034.104 kb on + strand, within H281DRAFT_00930 at 1034.114 kb on - strand, within H281DRAFT_00930 at 1034.114 kb on - strand, within H281DRAFT_00930 at 1034.114 kb on - strand, within H281DRAFT_00930 at 1034.169 kb on + strand, within H281DRAFT_00930 at 1034.207 kb on + strand, within H281DRAFT_00930 at 1034.207 kb on + strand, within H281DRAFT_00930 at 1034.212 kb on - strand, within H281DRAFT_00930 at 1034.212 kb on - strand, within H281DRAFT_00930 at 1034.212 kb on - strand, within H281DRAFT_00930 at 1034.212 kb on - strand, within H281DRAFT_00930 at 1034.608 kb on - strand at 1034.704 kb on + strand, within H281DRAFT_00931 at 1034.821 kb on + strand, within H281DRAFT_00931 at 1034.822 kb on - strand, within H281DRAFT_00931 at 1034.822 kb on - strand, within H281DRAFT_00931 at 1034.929 kb on - strand, within H281DRAFT_00931 at 1034.955 kb on - strand, within H281DRAFT_00931 at 1035.055 kb on + strand, within H281DRAFT_00931 at 1035.056 kb on - strand, within H281DRAFT_00931 at 1035.193 kb on - strand, within H281DRAFT_00931 at 1035.193 kb on - strand, within H281DRAFT_00931 at 1035.205 kb on + strand, within H281DRAFT_00931 at 1035.215 kb on - strand, within H281DRAFT_00931 at 1035.366 kb on + strand at 1035.392 kb on - strand at 1035.392 kb on - strand at 1035.846 kb on - strand, within H281DRAFT_00932 at 1036.055 kb on + strand at 1036.055 kb on + strand at 1036.056 kb on - strand at 1036.057 kb on + strand at 1036.057 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 1x remove 1,033,903 - +0.5 1,033,998 + H281DRAFT_00930 0.11 +0.3 1,034,053 + H281DRAFT_00930 0.21 +0.3 1,034,053 + H281DRAFT_00930 0.21 -0.3 1,034,104 + H281DRAFT_00930 0.31 +0.5 1,034,114 - H281DRAFT_00930 0.33 +0.9 1,034,114 - H281DRAFT_00930 0.33 +0.1 1,034,114 - H281DRAFT_00930 0.33 -1.4 1,034,169 + H281DRAFT_00930 0.43 +0.2 1,034,207 + H281DRAFT_00930 0.51 -2.2 1,034,207 + H281DRAFT_00930 0.51 -0.8 1,034,212 - H281DRAFT_00930 0.52 +0.2 1,034,212 - H281DRAFT_00930 0.52 -0.4 1,034,212 - H281DRAFT_00930 0.52 -1.0 1,034,212 - H281DRAFT_00930 0.52 +0.0 1,034,608 - +0.2 1,034,704 + H281DRAFT_00931 0.21 -0.2 1,034,821 + H281DRAFT_00931 0.36 -0.5 1,034,822 - H281DRAFT_00931 0.36 -0.4 1,034,822 - H281DRAFT_00931 0.36 +0.8 1,034,929 - H281DRAFT_00931 0.49 +0.1 1,034,955 - H281DRAFT_00931 0.53 -0.4 1,035,055 + H281DRAFT_00931 0.65 +0.5 1,035,056 - H281DRAFT_00931 0.65 -0.6 1,035,193 - H281DRAFT_00931 0.83 +0.9 1,035,193 - H281DRAFT_00931 0.83 -0.5 1,035,205 + H281DRAFT_00931 0.84 -1.0 1,035,215 - H281DRAFT_00931 0.85 -1.3 1,035,366 + +0.9 1,035,392 - -0.2 1,035,392 - -0.0 1,035,846 - H281DRAFT_00932 0.63 +0.0 1,036,055 + +0.6 1,036,055 + +1.3 1,036,056 - -0.5 1,036,057 + -0.1 1,036,057 + -0.6
Or see this region's nucleotide sequence