Experiment: Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 1x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_00788 and H281DRAFT_00789 are separated by 382 nucleotides H281DRAFT_00789 and H281DRAFT_00790 are separated by 50 nucleotides H281DRAFT_00790 and H281DRAFT_00791 are separated by 2 nucleotides H281DRAFT_00791 and H281DRAFT_00792 are separated by 27 nucleotides
H281DRAFT_00788: H281DRAFT_00788 - transcriptional regulator, LysR family, at 875,687 to 876,601
_00788
H281DRAFT_00789: H281DRAFT_00789 - SSU ribosomal protein S6P, at 876,984 to 877,358
_00789
H281DRAFT_00790: H281DRAFT_00790 - restart primosome assembly protein PriB, at 877,409 to 877,708
_00790
H281DRAFT_00791: H281DRAFT_00791 - SSU ribosomal protein S18P, at 877,711 to 877,986
_00791
H281DRAFT_00792: H281DRAFT_00792 - LSU ribosomal protein L9P, at 878,014 to 878,466
_00792
Position (kb) 876
877
878 Strain fitness (log2 ratio) -1
0
1 at 876.101 kb on + strand, within H281DRAFT_00788 at 876.101 kb on + strand, within H281DRAFT_00788 at 876.101 kb on + strand, within H281DRAFT_00788 at 876.102 kb on - strand, within H281DRAFT_00788 at 876.114 kb on + strand, within H281DRAFT_00788 at 876.197 kb on + strand, within H281DRAFT_00788 at 876.363 kb on + strand, within H281DRAFT_00788 at 876.363 kb on + strand, within H281DRAFT_00788 at 876.483 kb on - strand, within H281DRAFT_00788 at 876.515 kb on + strand at 876.515 kb on + strand at 876.515 kb on + strand at 876.516 kb on - strand at 876.516 kb on - strand at 876.549 kb on - strand at 876.563 kb on + strand at 876.563 kb on + strand at 876.578 kb on + strand at 876.579 kb on - strand at 876.596 kb on + strand at 876.597 kb on - strand at 876.599 kb on + strand at 876.600 kb on - strand at 876.600 kb on - strand at 876.600 kb on - strand at 876.722 kb on + strand at 876.722 kb on + strand at 876.723 kb on - strand at 876.832 kb on + strand at 876.832 kb on + strand at 876.832 kb on + strand at 876.832 kb on + strand at 876.833 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 1x remove 876,101 + H281DRAFT_00788 0.45 +0.1 876,101 + H281DRAFT_00788 0.45 -1.1 876,101 + H281DRAFT_00788 0.45 +0.0 876,102 - H281DRAFT_00788 0.45 -1.2 876,114 + H281DRAFT_00788 0.47 +0.4 876,197 + H281DRAFT_00788 0.56 +0.5 876,363 + H281DRAFT_00788 0.74 +1.2 876,363 + H281DRAFT_00788 0.74 +0.0 876,483 - H281DRAFT_00788 0.87 -0.5 876,515 + +0.4 876,515 + -0.5 876,515 + +1.0 876,516 - -0.1 876,516 - +0.1 876,549 - +1.6 876,563 + -0.2 876,563 + +1.4 876,578 + +0.8 876,579 - -0.3 876,596 + +1.6 876,597 - -0.3 876,599 + +0.6 876,600 - +0.4 876,600 - -0.3 876,600 - +0.2 876,722 + -0.1 876,722 + -0.4 876,723 - -0.8 876,832 + -0.1 876,832 + +0.6 876,832 + +0.8 876,832 + -0.1 876,833 - +0.0
Or see this region's nucleotide sequence