Experiment: Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 1x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_00785 and H281DRAFT_00786 are separated by 105 nucleotides H281DRAFT_00786 and H281DRAFT_00787 are separated by 95 nucleotides
H281DRAFT_00785: H281DRAFT_00785 - 2-hydroxy-3-oxopropionate reductase, at 871,836 to 872,744
_00785
H281DRAFT_00786: H281DRAFT_00786 - hydroxypyruvate isomerase, at 872,850 to 873,659
_00786
H281DRAFT_00787: H281DRAFT_00787 - tartronate-semialdehyde synthase, at 873,755 to 875,530
_00787
Position (kb) 872
873
874 Strain fitness (log2 ratio) -2
-1
0
1 at 871.951 kb on - strand, within H281DRAFT_00785 at 871.992 kb on + strand, within H281DRAFT_00785 at 872.280 kb on - strand, within H281DRAFT_00785 at 872.280 kb on - strand, within H281DRAFT_00785 at 872.939 kb on - strand, within H281DRAFT_00786 at 872.962 kb on + strand, within H281DRAFT_00786 at 873.130 kb on + strand, within H281DRAFT_00786 at 873.217 kb on + strand, within H281DRAFT_00786 at 873.237 kb on + strand, within H281DRAFT_00786 at 873.238 kb on - strand, within H281DRAFT_00786 at 874.134 kb on + strand, within H281DRAFT_00787 at 874.134 kb on + strand, within H281DRAFT_00787 at 874.311 kb on + strand, within H281DRAFT_00787 at 874.312 kb on - strand, within H281DRAFT_00787 at 874.366 kb on - strand, within H281DRAFT_00787 at 874.654 kb on + strand, within H281DRAFT_00787
Per-strain Table
Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 1x remove 871,951 - H281DRAFT_00785 0.13 -0.8 871,992 + H281DRAFT_00785 0.17 -0.7 872,280 - H281DRAFT_00785 0.49 -0.3 872,280 - H281DRAFT_00785 0.49 -0.4 872,939 - H281DRAFT_00786 0.11 +1.5 872,962 + H281DRAFT_00786 0.14 +0.4 873,130 + H281DRAFT_00786 0.35 -0.7 873,217 + H281DRAFT_00786 0.45 +0.3 873,237 + H281DRAFT_00786 0.48 +0.4 873,238 - H281DRAFT_00786 0.48 -0.3 874,134 + H281DRAFT_00787 0.21 +1.0 874,134 + H281DRAFT_00787 0.21 +0.4 874,311 + H281DRAFT_00787 0.31 -2.6 874,312 - H281DRAFT_00787 0.31 +0.9 874,366 - H281DRAFT_00787 0.34 +0.8 874,654 + H281DRAFT_00787 0.51 +0.4
Or see this region's nucleotide sequence