Experiment: Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 1x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_00664 and H281DRAFT_00665 are separated by 13 nucleotides H281DRAFT_00665 and H281DRAFT_00666 are separated by 331 nucleotides
H281DRAFT_00664: H281DRAFT_00664 - assimilatory nitrate reductase (NADH) beta subunit (EC 1.7.1.1), at 743,155 to 744,426
_00664
H281DRAFT_00665: H281DRAFT_00665 - assimilatory nitrate reductase (NADH) alpha subunit apoprotein (EC 1.7.1.1), at 744,440 to 747,280
_00665
H281DRAFT_00666: H281DRAFT_00666 - altronate hydrolase, at 747,612 to 749,168
_00666
Position (kb) 744
745
746
747
748 Strain fitness (log2 ratio) -2
-1
0
1 at 744.022 kb on + strand, within H281DRAFT_00664 at 744.022 kb on + strand, within H281DRAFT_00664 at 744.262 kb on - strand, within H281DRAFT_00664 at 744.458 kb on - strand at 744.822 kb on - strand, within H281DRAFT_00665 at 744.950 kb on + strand, within H281DRAFT_00665 at 745.195 kb on - strand, within H281DRAFT_00665 at 745.267 kb on - strand at 745.988 kb on + strand, within H281DRAFT_00665 at 746.181 kb on + strand, within H281DRAFT_00665 at 746.182 kb on - strand, within H281DRAFT_00665 at 746.296 kb on + strand, within H281DRAFT_00665 at 746.756 kb on + strand, within H281DRAFT_00665 at 746.756 kb on + strand, within H281DRAFT_00665 at 747.426 kb on + strand at 747.773 kb on + strand, within H281DRAFT_00666 at 748.120 kb on + strand, within H281DRAFT_00666 at 748.120 kb on + strand, within H281DRAFT_00666
Per-strain Table
Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 1x remove 744,022 + H281DRAFT_00664 0.68 -1.9 744,022 + H281DRAFT_00664 0.68 -1.5 744,262 - H281DRAFT_00664 0.87 -1.3 744,458 - -1.2 744,822 - H281DRAFT_00665 0.13 -0.5 744,950 + H281DRAFT_00665 0.18 -2.0 745,195 - H281DRAFT_00665 0.27 +0.1 745,267 - -0.9 745,988 + H281DRAFT_00665 0.54 -2.0 746,181 + H281DRAFT_00665 0.61 -1.3 746,182 - H281DRAFT_00665 0.61 -1.8 746,296 + H281DRAFT_00665 0.65 +0.0 746,756 + H281DRAFT_00665 0.82 -1.4 746,756 + H281DRAFT_00665 0.82 -2.1 747,426 + -0.1 747,773 + H281DRAFT_00666 0.10 +0.5 748,120 + H281DRAFT_00666 0.33 +0.1 748,120 + H281DRAFT_00666 0.33 +0.7
Or see this region's nucleotide sequence