Experiment: Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 1x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_00453 and H281DRAFT_00454 are separated by 48 nucleotides H281DRAFT_00454 and H281DRAFT_00455 are separated by 181 nucleotides
H281DRAFT_00453: H281DRAFT_00453 - two-component system, NtrC family, nitrogen regulation sensor histidine kinase GlnL, at 503,612 to 504,754
_00453
H281DRAFT_00454: H281DRAFT_00454 - nitrogen metabolism transcriptional regulator, NtrC, Fis family, at 504,803 to 506,320
_00454
H281DRAFT_00455: H281DRAFT_00455 - prolyl oligopeptidase, at 506,502 to 508,682
_00455
Position (kb) 504
505
506
507 Strain fitness (log2 ratio) -6
-5
-4
-3
-2
-1
0
1
2 at 503.987 kb on + strand, within H281DRAFT_00453 at 503.987 kb on + strand, within H281DRAFT_00453 at 503.987 kb on + strand, within H281DRAFT_00453 at 504.189 kb on - strand, within H281DRAFT_00453 at 504.189 kb on - strand, within H281DRAFT_00453 at 504.532 kb on - strand, within H281DRAFT_00453 at 504.532 kb on - strand, within H281DRAFT_00453 at 504.535 kb on + strand, within H281DRAFT_00453 at 504.535 kb on + strand, within H281DRAFT_00453 at 504.752 kb on + strand at 504.800 kb on + strand at 504.800 kb on + strand at 504.800 kb on + strand at 504.800 kb on + strand at 504.800 kb on + strand at 504.801 kb on - strand at 504.801 kb on - strand at 504.801 kb on - strand at 504.801 kb on - strand at 504.802 kb on + strand at 504.803 kb on - strand at 504.823 kb on - strand at 504.903 kb on + strand at 505.345 kb on + strand, within H281DRAFT_00454 at 505.346 kb on - strand, within H281DRAFT_00454 at 505.346 kb on - strand, within H281DRAFT_00454 at 505.419 kb on + strand, within H281DRAFT_00454 at 506.278 kb on + strand at 506.363 kb on - strand at 506.470 kb on + strand at 506.470 kb on + strand at 506.709 kb on + strand at 506.710 kb on - strand at 506.710 kb on - strand at 506.761 kb on - strand, within H281DRAFT_00455 at 506.761 kb on - strand, within H281DRAFT_00455 at 507.078 kb on - strand, within H281DRAFT_00455 at 507.084 kb on + strand, within H281DRAFT_00455 at 507.228 kb on + strand at 507.291 kb on + strand, within H281DRAFT_00455 at 507.291 kb on + strand, within H281DRAFT_00455 at 507.291 kb on + strand, within H281DRAFT_00455 at 507.291 kb on + strand, within H281DRAFT_00455 at 507.292 kb on - strand, within H281DRAFT_00455 at 507.294 kb on + strand, within H281DRAFT_00455 at 507.294 kb on + strand, within H281DRAFT_00455 at 507.317 kb on - strand, within H281DRAFT_00455
Per-strain Table
Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 1x remove 503,987 + H281DRAFT_00453 0.33 -2.5 503,987 + H281DRAFT_00453 0.33 -3.6 503,987 + H281DRAFT_00453 0.33 +0.3 504,189 - H281DRAFT_00453 0.50 +0.8 504,189 - H281DRAFT_00453 0.50 -3.1 504,532 - H281DRAFT_00453 0.80 -2.3 504,532 - H281DRAFT_00453 0.80 -2.7 504,535 + H281DRAFT_00453 0.81 -3.7 504,535 + H281DRAFT_00453 0.81 -0.5 504,752 + -0.8 504,800 + -0.8 504,800 + -0.5 504,800 + -0.7 504,800 + +0.2 504,800 + +1.5 504,801 - -2.1 504,801 - -1.6 504,801 - -2.1 504,801 - -3.7 504,802 + -0.2 504,803 - -1.9 504,823 - -5.8 504,903 + -2.3 505,345 + H281DRAFT_00454 0.36 -2.9 505,346 - H281DRAFT_00454 0.36 -2.1 505,346 - H281DRAFT_00454 0.36 -1.1 505,419 + H281DRAFT_00454 0.41 -1.2 506,278 + -3.1 506,363 - +0.8 506,470 + -0.5 506,470 + +2.0 506,709 + +0.4 506,710 - +0.2 506,710 - -0.0 506,761 - H281DRAFT_00455 0.12 +0.1 506,761 - H281DRAFT_00455 0.12 +0.3 507,078 - H281DRAFT_00455 0.26 -0.7 507,084 + H281DRAFT_00455 0.27 -0.6 507,228 + +1.8 507,291 + H281DRAFT_00455 0.36 +0.7 507,291 + H281DRAFT_00455 0.36 -0.2 507,291 + H281DRAFT_00455 0.36 -0.5 507,291 + H281DRAFT_00455 0.36 +0.5 507,292 - H281DRAFT_00455 0.36 +1.6 507,294 + H281DRAFT_00455 0.36 -0.1 507,294 + H281DRAFT_00455 0.36 +0.0 507,317 - H281DRAFT_00455 0.37 +0.0
Or see this region's nucleotide sequence