Experiment: Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 1x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_00393 and H281DRAFT_00394 are separated by 221 nucleotides H281DRAFT_00394 and H281DRAFT_00395 are separated by 264 nucleotides H281DRAFT_00395 and H281DRAFT_00397 are separated by 450 nucleotides
H281DRAFT_00393: H281DRAFT_00393 - hypothetical protein, at 436,880 to 437,401
_00393
H281DRAFT_00394: H281DRAFT_00394 - osmotically inducible lipoprotein OsmB, at 437,623 to 437,835
_00394
H281DRAFT_00395: H281DRAFT_00395 - hydroxymethylpyrimidine synthase, at 438,100 to 440,031
_00395
H281DRAFT_00397: H281DRAFT_00397 - GreA/GreB family elongation factor, at 440,482 to 440,901
_00397
Position (kb) 438
439
440
441 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 437.215 kb on - strand, within H281DRAFT_00393 at 437.236 kb on - strand, within H281DRAFT_00393 at 437.332 kb on + strand, within H281DRAFT_00393 at 437.333 kb on - strand, within H281DRAFT_00393 at 437.333 kb on - strand, within H281DRAFT_00393 at 437.475 kb on + strand at 437.475 kb on + strand at 437.475 kb on + strand at 437.475 kb on + strand at 437.476 kb on - strand at 437.476 kb on - strand at 437.511 kb on - strand at 437.624 kb on + strand at 437.625 kb on - strand at 437.625 kb on - strand at 437.923 kb on + strand at 437.923 kb on + strand at 437.923 kb on + strand at 437.924 kb on - strand at 438.113 kb on + strand at 438.455 kb on + strand, within H281DRAFT_00395 at 438.455 kb on + strand, within H281DRAFT_00395 at 438.800 kb on + strand, within H281DRAFT_00395 at 438.848 kb on + strand, within H281DRAFT_00395 at 438.848 kb on + strand, within H281DRAFT_00395 at 438.849 kb on - strand, within H281DRAFT_00395 at 438.849 kb on - strand, within H281DRAFT_00395 at 438.887 kb on + strand, within H281DRAFT_00395 at 438.987 kb on - strand, within H281DRAFT_00395 at 438.987 kb on - strand, within H281DRAFT_00395 at 439.115 kb on + strand, within H281DRAFT_00395 at 439.568 kb on + strand, within H281DRAFT_00395 at 439.568 kb on + strand, within H281DRAFT_00395 at 439.604 kb on + strand, within H281DRAFT_00395 at 439.947 kb on - strand at 440.178 kb on + strand at 440.251 kb on + strand at 440.405 kb on - strand at 440.415 kb on + strand at 440.415 kb on + strand at 440.415 kb on + strand at 440.416 kb on - strand at 440.461 kb on + strand at 440.483 kb on + strand at 440.782 kb on + strand, within H281DRAFT_00397 at 440.871 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 1x remove 437,215 - H281DRAFT_00393 0.64 +0.1 437,236 - H281DRAFT_00393 0.68 -0.3 437,332 + H281DRAFT_00393 0.87 -0.1 437,333 - H281DRAFT_00393 0.87 +0.9 437,333 - H281DRAFT_00393 0.87 -0.5 437,475 + +0.4 437,475 + -0.6 437,475 + +0.2 437,475 + +0.2 437,476 - +0.7 437,476 - +0.0 437,511 - -0.1 437,624 + +0.8 437,625 - +0.8 437,625 - -0.1 437,923 + +1.1 437,923 + +0.4 437,923 + -0.5 437,924 - +0.7 438,113 + -0.1 438,455 + H281DRAFT_00395 0.18 -4.4 438,455 + H281DRAFT_00395 0.18 -4.7 438,800 + H281DRAFT_00395 0.36 -3.0 438,848 + H281DRAFT_00395 0.39 -2.2 438,848 + H281DRAFT_00395 0.39 -3.9 438,849 - H281DRAFT_00395 0.39 -4.0 438,849 - H281DRAFT_00395 0.39 -3.5 438,887 + H281DRAFT_00395 0.41 -1.6 438,987 - H281DRAFT_00395 0.46 -0.2 438,987 - H281DRAFT_00395 0.46 -3.7 439,115 + H281DRAFT_00395 0.53 -1.3 439,568 + H281DRAFT_00395 0.76 -3.8 439,568 + H281DRAFT_00395 0.76 -3.5 439,604 + H281DRAFT_00395 0.78 -2.4 439,947 - -0.3 440,178 + -3.1 440,251 + -2.1 440,405 - +0.3 440,415 + +2.0 440,415 + +1.7 440,415 + +0.3 440,416 - +0.1 440,461 + +2.2 440,483 + -0.6 440,782 + H281DRAFT_00397 0.71 -0.2 440,871 - -0.1
Or see this region's nucleotide sequence