Experiment: Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 1x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_00284 and H281DRAFT_00285 are separated by 55 nucleotides H281DRAFT_00285 and H281DRAFT_00286 are separated by 293 nucleotides
H281DRAFT_00284: H281DRAFT_00284 - Predicted membrane protein, at 304,670 to 305,884
_00284
H281DRAFT_00285: H281DRAFT_00285 - PhnB protein, at 305,940 to 306,356
_00285
H281DRAFT_00286: H281DRAFT_00286 - transaldolase, at 306,650 to 307,603
_00286
Position (kb) 305
306
307 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 305.012 kb on + strand, within H281DRAFT_00284 at 305.012 kb on + strand, within H281DRAFT_00284 at 305.012 kb on + strand, within H281DRAFT_00284 at 305.013 kb on - strand, within H281DRAFT_00284 at 305.073 kb on - strand, within H281DRAFT_00284 at 305.073 kb on - strand, within H281DRAFT_00284 at 305.222 kb on + strand, within H281DRAFT_00284 at 305.223 kb on - strand, within H281DRAFT_00284 at 305.273 kb on + strand, within H281DRAFT_00284 at 305.274 kb on - strand, within H281DRAFT_00284 at 305.276 kb on - strand, within H281DRAFT_00284 at 305.276 kb on - strand, within H281DRAFT_00284 at 305.823 kb on + strand at 305.824 kb on - strand at 306.302 kb on - strand, within H281DRAFT_00285 at 306.302 kb on - strand, within H281DRAFT_00285 at 306.302 kb on - strand, within H281DRAFT_00285 at 306.341 kb on - strand at 306.397 kb on + strand at 306.433 kb on - strand at 306.621 kb on + strand at 307.065 kb on + strand, within H281DRAFT_00286 at 307.075 kb on - strand, within H281DRAFT_00286 at 307.266 kb on + strand, within H281DRAFT_00286 at 307.267 kb on - strand, within H281DRAFT_00286
Per-strain Table
Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 1x remove 305,012 + H281DRAFT_00284 0.28 +0.0 305,012 + H281DRAFT_00284 0.28 -0.4 305,012 + H281DRAFT_00284 0.28 -1.5 305,013 - H281DRAFT_00284 0.28 +0.2 305,073 - H281DRAFT_00284 0.33 +0.3 305,073 - H281DRAFT_00284 0.33 -0.3 305,222 + H281DRAFT_00284 0.45 -1.9 305,223 - H281DRAFT_00284 0.46 -0.1 305,273 + H281DRAFT_00284 0.50 -0.1 305,274 - H281DRAFT_00284 0.50 +2.3 305,276 - H281DRAFT_00284 0.50 -1.9 305,276 - H281DRAFT_00284 0.50 -0.3 305,823 + -0.2 305,824 - +1.4 306,302 - H281DRAFT_00285 0.87 -0.4 306,302 - H281DRAFT_00285 0.87 +0.5 306,302 - H281DRAFT_00285 0.87 -0.2 306,341 - -0.1 306,397 + +0.1 306,433 - -0.6 306,621 + -0.6 307,065 + H281DRAFT_00286 0.44 -3.0 307,075 - H281DRAFT_00286 0.45 -1.2 307,266 + H281DRAFT_00286 0.65 -1.9 307,267 - H281DRAFT_00286 0.65 -3.6
Or see this region's nucleotide sequence